New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3457714 = | 47 (0.800) | 3 (0.050) | 3/244 | NT | 6.0% | coding (977/1392 nt) | bhbP | D‑beta‑hydroxybutyrate permease |
? | NC_002947 | 3457752 = | 50 (0.890) | coding (939/1392 nt) | bhbP | D‑beta‑hydroxybutyrate permease |
GCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAGCCCAGATGGCCGTCA > NC_002947/3457569‑3457858 | caggcatgagtgcaccggtacaaagcgacgtgaccaagctgacggccatctgggctgtgcaggccgcgttgctggtgggcatcctgatggtcctggtgtgcgcctttggcgccattcgtacacgcctggccgaaggcaccaaaagcgcg > 2:173039‑M1/147‑149 (MQ=255) caggcatgagtgcaccggtacaaagcgacgtgaccaagctgacggccatctgggctgtgcaggccgcgttgctggtgggcatcctgatggtcctggtgtgcgcctttcgcgccattcgtacacgcctggccgaaggcaccaaaagcgcg < 1:315264‑M1/3‑1 (MQ=255) cccGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCg < 3:94336/147‑1 (MQ=255) cccGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCg > 4:94336/1‑147 (MQ=255) tgagtgcaccggtacaaagcgacgtgaccaagctgacggccatctgggctgtgcaggccgcgttgctggtgggcatcctgatggtcctggtgtgcgcctttggcgccattcgtacacgcctggccgaaggcaccaaaagcGCgg < 1:127059‑M1/4‑1 (MQ=255) tgagtgcaccggtacaaagcgacgtgaccaagctgacggccatctgggctgtgcaggccgcgttgctggtgggcatcctgatggtcctggtgtgcgcctttggcgccattcgtacacgcctggccgaaggcaccaaaagcGCgg > 2:127059‑M1/141‑144 (MQ=255) cGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGtt > 5:177135/1‑145 (MQ=255) cGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGtt < 6:177135/145‑1 (MQ=255) gTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAg < 6:290666/149‑1 (MQ=255) ccGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGc < 8:136316/149‑1 (MQ=255) ggCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCGGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGcac < 8:186963/149‑1 (MQ=255) gCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGcac > 2:220351/1‑148 (MQ=255) ctgacggccatctgggctgtgcaggccgcgttgctggtgggcatcctgatggtcctggtgtgcgcctttggcgccattcgtacacgcctggccgaaggcaccaaaagcGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCt > 5:161700‑M1/109‑149 (MQ=255) tgacggccatctgggctgtgcaggccgcgttgctggtgggcatcctgatggtcctggtgtgcgcctttggcgccattcgtacacgcctggccgaaggcaccaaaagcGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACcgc < 4:332011‑M1/38‑1 (MQ=255) tgacggccatctgggctgtgcaggccgcgttgctggtgggcatcctgatggtcctggtgtgcgcctttggcgccattcgtacacgcctggccgaaggcaccaaaagcGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACcgc > 3:332011‑M1/108‑145 (MQ=255) ggTGATGGCTTCGTTCACCAAGGGGTGGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCttt < 3:356918/149‑1 (MQ=255) gCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGc < 8:253698/148‑1 (MQ=255) ttCGTTCACCAAGGGGTTGGGGATGCTGCGGCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCt > 1:29268/1‑149 (MQ=255) ccAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAATGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAgg > 8:73698/1‑149 (MQ=255) ccAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTg > 8:169998/1‑134 (MQ=255) ccAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTg < 7:169998/134‑1 (MQ=255) ccAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAgg > 5:87916/1‑149 (MQ=255) cAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTc < 4:284443/141‑1 (MQ=255) cAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTc > 3:284443/1‑141 (MQ=255) cAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGc > 6:335069/1‑149 (MQ=255) aGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCgt > 2:132602/1‑149 (MQ=255) ttGGGAATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTAc > 8:196321/1‑148 (MQ=255) aTGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGgc < 1:297779/149‑1 (MQ=255) tgc‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGTGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGcc > 3:313192/1‑148 (MQ=255) gtgggcatcctgatggtcctggtgtgcgcctttggcgccattcgtacacgcctggccgaaggcaccaaaagcgc < 4:114600‑M1/2‑1 (MQ=255) gtgggcatcctgatggtcctggtgtgcgcctttggcgccattcgtacacgcctggccgaaggcaccaaaagcgc > 3:114600‑M1/73‑74 (MQ=255) c‑gcAGGGCATCGGCCAGCACGAGAAAACCCGGCAGCGATGAGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGcc < 8:342722/119‑1 (MQ=255) c‑gcAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGcc > 7:342722/1‑119 (MQ=255) gggCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGgcg < 6:127173/149‑1 (MQ=255) gggCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGgcg > 6:114934/1‑149 (MQ=255) gggCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGgcg > 5:388449/1‑149 (MQ=255) gCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGca < 1:220351/149‑1 (MQ=255) cATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGca > 4:299343/1‑148 (MQ=255) tCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCtcac > 7:130833/1‑149 (MQ=255) cACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGAACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCa > 7:9660/1‑149 (MQ=255) cAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCAt > 6:48630/1‑147 (MQ=255) cAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCa < 5:335069/149‑1 (MQ=255) cAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCa < 7:196321/149‑1 (MQ=255) gAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAgg < 6:87916/149‑1 (MQ=255) aaaCCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGAt < 2:29268/149‑1 (MQ=255) ccGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGcc > 6:359847/1‑148 (MQ=255) ggCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCccac > 1:260223/1‑149 (MQ=255) cAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAATGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCccacca < 7:73698/149‑1 (MQ=255) aGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAAc > 2:315264/1‑149 (MQ=255) cGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAAcgcg > 4:197528/1‑149 (MQ=255) aTTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGTACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGc < 8:9660/149‑1 (MQ=255) gcCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAg < 6:388449/149‑1 (MQ=255) cAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCTCACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAGcc < 8:130833/149‑1 (MQ=255) aGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGTGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAGCCCAg < 4:313192/149‑1 (MQ=255) gCCGTATTCCGAAGCGGTGTTCATGGCTGCCCGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCCCCAGCAACGCGGCCTGCACAGcc > 5:325429/1‑145 (MQ=255) ccGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAGCCCAGAt < 5:295935/149‑1 (MQ=255) ccGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAGCCCAGAt < 2:260223/149‑1 (MQ=255) gTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAGCCCAGATgg < 3:299343/149‑1 (MQ=255) cGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAGCCCAGATGGCCGTc < 1:132602/148‑1 (MQ=255) cGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAGCCCAGATGGCCGTCa < 5:114934/149‑1 (MQ=255) | GCCCGAAGCGGAGCCGGTGATGCCGGCCAGCAAGGTCACGGTGATGGCTTCGTTCACCAAGGGGTTGGGGATGCTGC‑GCAGGGCATCGGCCAGCACCAGAAAACCCGGCAGCGAGGCGATTACCGCGCCAAAGCCGTATTCCGAAGCGGTGTTCATGGCTGCCAGCAAGGCACCACCCACCGCGCTTTTGGTGCCTTCGGCCAGGCGTGTACGAATGGCGCCAAAGGCGCACACCAGGACCATCAGGATGCCCACCAGCAACGCGGCCTGCACAGCCCAGATGGCCGTCA > NC_002947/3457569‑3457858 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |