New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4244718 =	48 (0.810)	3 (0.050)	3/248	NT	5.9%	coding (303/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH
	?	NC_002947	4244794 =	49 (0.860)					coding (227/1191 nt)	aruH	arginine‑‑pyruvate transaminase AruH

CCATTCTCGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAATGGGTATGGCCAGCGCGCAGGCTGTCGAT  >  NC_002947/4244572‑4244858                                                                                                                                                   |                                                                                                                                             ccATTCTCGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGc                                                                                                                                            <  7:331701/149‑1 (MQ=255)    gctgaggacaaggacatcctgctgctgtcggtgggtgacccggacttcgacactcccgcgcctatcgtcgaggcggccatcgacagcctgcgcgctggccatacccattacgccgatgtacgcggcaagctggcgctgcgccag                                                                                                                                              >  6:344849‑M1/144‑144 (MQ=255)    gctgaggacaaggacatcctgctgctgtcggtgggtgacccggacttcgacactcccgcgcctatcgtcgaggcggccatcgacagcctgcgcgctggccatacccattacgccgatgtacgcggcaagctggcgctgcgccag                                                                                                                                              <  5:344849‑M1/1‑1 (MQ=255)      ctcGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGccccc                                                                                                                                        <  2:3568/148‑1 (MQ=255)      ctcGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCg                                                                                                                                       >  7:310877/1‑149 (MQ=255)        cGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGc                                                                                                                                      >  7:182114/1‑148 (MQ=255)         gggCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGc                                                                                                                                      <  8:310877/147‑1 (MQ=255)         gggCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCa                                                                                                                                    <  7:294419/149‑1 (MQ=255)         gggCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCa                                                                                                                                    >  6:206737/1‑149 (MQ=255)             ttGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCAc                                                                                                                                >  5:324535/1‑149 (MQ=255)                                     gcgcCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGc                                                                                                        <  2:175094/149‑1 (MQ=255)                                        ccACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTg                                                                                                     >  1:109987/1‑149 (MQ=255)                                            aGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCcg                                                                                                 <  8:237943/149‑1 (MQ=255)                                              gcgcCAAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCcgct                                                                                               >  1:185086/1‑149 (MQ=255)                                                gcCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCcgctgc                                                                                             <  5:206737/149‑1 (MQ=255)                                                gcCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCcgctgc                                                                                             >  3:10735/1‑149 (MQ=255)                                                gcCAAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCcgctgc                                                                                             <  6:178071/149‑1 (MQ=255)                                                 ccGAAAACGGCCTCGTAGGGGACATACATCGGCTCGGCAACGATCACCTCATCGCCTGGGGCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCcgctgcg                                                                                            <  3:282082/149‑1 (MQ=255)                                                   gAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCcgctgcgct                                                                                          >  2:341416/1‑149 (MQ=255)                                                   gAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCcgctgcgct                                                                                          >  6:332213/1‑149 (MQ=255)                                                      cacGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGcc                                                                                       <  2:289067/149‑1 (MQ=255)                                                                   gTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGATGGTTGGc                                                                          >  1:263141/1‑149 (MQ=255)                                                                        atacatCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATgg                                                                     >  2:77958/1‑149 (MQ=255)                                                                         gaggcggccatcgacagcctgcgcgctggccatacccattacgccgatgtacgcggcaagctggcgctgcgccaGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATgg                                                                     >  2:311967‑M1/75‑148 (MQ=255)                                                                            atCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTg                                                                 >  4:221254/1‑149 (MQ=255)                                                                            atCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTg                                                                 >  7:79105/1‑149 (MQ=255)                                                                              cGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGTGATGGCCTGgc                                                               >  7:150229/1‑149 (MQ=255)                                                                                  atcgacagcctgcgcgctggccatacccattacgccgatgtacgcggcaagctggcgctgcgccaGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACg                                                                                >  1:373194‑M1/66‑128 (MQ=255)                                                                                  atcgacagcctgcgcgctggccatacccattacgccgatgtacgcggcaagctggcgctgcgccaGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACg                                                                                <  2:373194‑M1/63‑1 (MQ=255)                                                                                     gCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAgcgc                                                        >  1:72401/1‑149 (MQ=255)                                                                                       aaCGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAgcgc                                                        >  7:177227/1‑147 (MQ=255)                                                                                       aaCGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCa                                                      <  7:15326/149‑1 (MQ=255)                                                                                                cTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCa                                                                                                                                 >  1:99864/1‑65 (MQ=255)                                                                                                cTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCa                                                                                                                                 <  2:99864/65‑1 (MQ=255)                                                                                                cTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCcgc                                             <  5:332213/149‑1 (MQ=255)                                                                                                cTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCcgc                                             >  5:345820/1‑149 (MQ=255)                                                                                                cTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCcgc                                             <  1:341416/149‑1 (MQ=255)                                                                                                cTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCcgc                                             >  3:331473/1‑149 (MQ=255)                                                                                                 tCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCcgcg                                            >  1:44065/1‑149 (MQ=255)                                                                                                   aTCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCcgcg                                            <  1:77958/147‑1 (MQ=255)                                                                                                      gCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTa                                          >  4:63116/1‑146 (MQ=255)                                                                                                      gCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTa                                          <  3:63116/146‑1 (MQ=255)                                                                                                       ccTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCtt                                                  >  7:253901/1‑137 (MQ=255)                                                                                                       ccTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCtt                                                  <  8:253901/137‑1 (MQ=255)                                                                                                       ccTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATc                                      <  6:345820/149‑1 (MQ=255)                                                                                                          gcggcccgTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGc                                   <  8:17305/142‑1 (MQ=255)                                                                                                           ggTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGc                                   <  6:324535/148‑1 (MQ=255)                                                                                                               gAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAAt                              >  5:203104/1‑149 (MQ=255)                                                                                                                aGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGTCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAATg                             >  8:48924/1‑149 (MQ=255)                                                                                                                              cACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAATGGGTATGGCCAgcgc               >  5:170375/1‑149 (MQ=255)                                                                                                                                   aGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGTGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAATGGGTATGGCCAGCGCGCAgg          <  8:150229/149‑1 (MQ=255)                                                                                                                                        aaTGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAATGGGTATGGCCAGCGCGCAGGCTGTc     >  5:302639/1‑149 (MQ=255)                                                                                                                                          tGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAATGGGTATGGCCAGCGCGCAGGCTGTCGa   <  2:44065/149‑1 (MQ=255)                                                                                                                                            cgcACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAATGGGTATGGCCAGCGCGCAGGCTGTCGAt  <  8:182114/148‑1 (MQ=255)                                                                                                                                               aCTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCcgcg                                            >  2:379192/1‑103 (MQ=255)                                                                                                                                               aCTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCcgcg                                            <  1:379192/103‑1 (MQ=255)                                                                                                                                                   GGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAATGGGTATg                       <  2:325602‑M1/120‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                             CCATTCTCGGGCTTGACCGGTACCGGCACCACCTTGGCGCCACAGGCGCCGAACACGGCCTCGTAGGTGACATACATCGGTTCGGCAACGATCACCTCATCGCCTGGGTCGAGTATGCACTGGGCCACGCAGTACAATGCGCACTGGGCCCCCGCCAGCACCGTCACCTGGTCGGCGCTCACCGCCTGGCCGCTGCGCTGCCGGTGACGGTTGGCGATGGCCTGGCGCAGCGCCAGCTTGCCGCGTACATCGGCGTAATGGGTATGGCCAGCGCGCAGGCTGTCGAT  >  NC_002947/4244572‑4244858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.