| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5681387 | 10 (0.170) | 3 (0.050) +G |
3/254 | NT | 33.5% | intergenic (‑105/+99) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| ? | NC_002947 | = 5681415 | 2 (0.030) | intergenic (‑133/+71) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein | |||||
ACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCAC > NC_002947/5681242‑5681521 | aCCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAgg > 6:243051/1‑149 (MQ=255) ggTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCAt < 6:243137/148‑1 (MQ=255) gTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCa > 8:149596/1‑149 (MQ=255) gTTGAAGCGGTCACCGTAATACCTGCACCCACAGACCTCCGGAGGTGGGCTGGGTTCCTGGTGTGTTGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCa < 6:231282/149‑1 (MQ=37) aaGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGa < 8:34084/148‑1 (MQ=255) aaGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGa < 6:365825/148‑1 (MQ=255) gCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAACGGGCGCGAAGCGGCCCCCGGCGTTCATTGCCACTGCATgccac > 3:289715/1‑145 (MQ=255) ttCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCAt > 1:184147/1‑141 (MQ=255) ttCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCAt < 2:184147/141‑1 (MQ=255) cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagc < 7:149596‑M1/149‑18 (MQ=255) aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCCCTGCATGAA‑‑‑‑CCGCcgggggggctgggccgcc > 6:214612‑M1/1‑131 (MQ=255) aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagcc < 5:243051‑M1/149‑19 (MQ=255) cacaGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcgg < 1:15491‑M1/131‑4 (MQ=255) cacaGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcgg > 2:15491‑M1/1‑128 (MQ=255) cctcctTATGTGGGCTGGGTTCCTGTTGTGTTGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcga < 4:285186‑M1/149‑28 (MQ=255) cctcctGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGATAGGGCTGCGCAGCAGCCCCggcggttcatgcagtggcaatgaaagcctggggccgcttcgcgcccctttcgcga < 7:293135‑M1/149‑56 (MQ=255) gctctgggcTGGGTTCCTGTTGTGCTGCTGATGGCTTCGTTCTTTGTGGGCGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagcccgatcgcgacacaag < 7:338497‑M1/145‑34 (MQ=255) ggTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggc < 5:214612‑M1/149‑36 (MQ=255) gTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgccgcccaatagcgacacaaagccgctccccca > 6:322397‑M1/1‑104 (MQ=255) tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgc > 2:280360‑M1/1‑99 (MQ=255) tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgc < 1:280360‑M1/124‑26 (MQ=255) tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTAGCGAAACGGGCCCGAACCCGCCCCAAGCATTAATTTACAATGCATGAACCCCCCGG‑‑‑‑GCTGCTGCGCACCCCAATCCCGACCCAACGCCCCAGCCACACCaca > 2:262943/1‑147 (MQ=255) tgATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCATGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCATTAATTGCCACTGCATGAA‑‑‑‑ACGCcggggctgctgcgcagcccaaaagcgacacaaagccgcacccacaccacaccacc > 2:274351‑M1/1‑94 (MQ=255) catGCTTATGCCTTCTTTCTTTGTGGGAGCCGCCTTGTGCCGCGAAAGGGGCGCTAAGCGGCCCCAGGCTTTCATTGCAACTGCATCAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccacc < 5:95046‑M1/147‑56 (MQ=255) aTGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCAGCCCCggcggttcatgcagtggcaatgaaa < 5:4150‑M1/83‑26 (MQ=255) aTGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCAGCCCCggcggttcatgcagtggcaatgaaa > 6:4150‑M1/1‑58 (MQ=255) cTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCTAAAGGGGCGCTAAGCGCCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgctaaaaatggccgctcccactccagaccaccaggccctgcgcc < 1:274351‑M1/149‑68 (MQ=255) gTTCTTTGTGGGAGCGGCCTTGTGGCGCTAACGGGGCGCGAAGCGGCCCCAGGCTTTCATTCCCACTCCATGAA‑‑‑‑CCGCcggggcggcggcgcagccctatcgccacacaaggccgctcccactccagaccaccaggccctgcgcctca < 5:322397‑M1/148‑71 (MQ=255) gtgGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcacagccctatcgcgacacaaggccgctcccactccagcccaccaggccctgcgcctcacatcctaa > 7:297073‑M1/1‑71 (MQ=255) tCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccagcccacctcaggagg < 7:293135‑M2/149‑96 (MQ=255) cgcgAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCCGGGGCGGCTGCGCAGCCCAATAGCGACACAAGGCCCCGCCCCCGCCCGCCCCCCACGCCCGGCGCCTCACATACGACACCACGTCAGGGTGCAgc > 8:140195/1‑148 (MQ=16) gAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcga < 6:351034‑M1/77‑28 (MQ=255) gAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcga > 5:351034‑M1/1‑50 (MQ=255) ccAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcac < 3:330758‑M1/140‑111 (MQ=255) ccAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcac > 4:330758‑M1/1‑30 (MQ=255) | ACCAGGTGGGTCCAGGCGTTGAAGCGTTCACCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCAC > NC_002947/5681242‑5681521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |