| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5681387 | 10 (0.170) | 3 (0.050) +G |
3/254 | NT | 33.5% | intergenic (‑105/+99) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| ? | NC_002947 | = 5681415 | 2 (0.030) | intergenic (‑133/+71) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein | |||||
CAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCG > NC_002947/5681284‑5681554 | cAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagc < 7:149596‑M1/149‑18 (MQ=255) aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCCCTGCATGAA‑‑‑‑CCGCcgggggggctgggccgcc > 6:214612‑M1/1‑131 (MQ=255) aaaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagcc < 5:243051‑M1/149‑19 (MQ=255) cacaGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcgg < 1:15491‑M1/131‑4 (MQ=255) cacaGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcgg > 2:15491‑M1/1‑128 (MQ=255) cctcctTATGTGGGCTGGGTTCCTGTTGTGTTGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcga < 4:285186‑M1/149‑28 (MQ=255) gctctgggcTGGGTTCCTGTTGTGCTGCTGATGGCTTCGTTCTTTGTGGGCGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagcccgatcgcgacacaag < 7:338497‑M1/145‑34 (MQ=255) ggTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggc < 5:214612‑M1/149‑36 (MQ=255) gTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgccgcccaatagcgacacaaagccgctccccca > 6:322397‑M1/1‑104 (MQ=255) tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgc < 1:280360‑M1/124‑26 (MQ=255) tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgc > 2:280360‑M1/1‑99 (MQ=255) tgttgtGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTAGCGAAACGGGCCCGAACCCGCCCCAAGCATTAATTTACAATGCATGAACCCCCCGG‑‑‑‑GCTGCTGCGCACCCCAATCCCGACCCAACGCCCCAGCCACACCaca > 2:262943/1‑147 (MQ=255) tgATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCATGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCATTAATTGCCACTGCATGAA‑‑‑‑ACGCcggggctgctgcgcagcccaaaagcgacacaaagccgcacccacaccacaccacc > 2:274351‑M1/1‑94 (MQ=255) catGCTTATGCCTTCTTTCTTTGTGGGAGCCGCCTTGTGCCGCGAAAGGGGCGCTAAGCGGCCCCAGGCTTTCATTGCAACTGCATCAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccacc < 5:95046‑M1/147‑56 (MQ=255) cTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCTAAAGGGGCGCTAAGCGCCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgctaaaaatggccgctcccactccagaccaccaggccctgcgcc < 1:274351‑M1/149‑68 (MQ=255) gTTCTTTGTGGGAGCGGCCTTGTGGCGCTAACGGGGCGCGAAGCGGCCCCAGGCTTTCATTCCCACTCCATGAA‑‑‑‑CCGCcggggcggcggcgcagccctatcgccacacaaggccgctcccactccagaccaccaggccctgcgcctca < 5:322397‑M1/148‑71 (MQ=255) gtgGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcacagccctatcgcgacacaaggccgctcccactccagcccaccaggccctgcgcctcacatcctaa > 7:297073‑M1/1‑71 (MQ=255) tCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccacaaagaacgaagccatcagcatcacaacaggaacccagcccacctcaggagg < 7:293135‑M2/149‑96 (MQ=255) cgcgAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCCGGGGCGGCTGCGCAGCCCAATAGCGACACAAGGCCCCGCCCCCGCCCGCCCCCCACGCCCGGCGCCTCACATACGACACCACGTCAGGGTGCAgc > 8:140195/1‑148 (MQ=16) gAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcga > 5:351034‑M1/1‑50 (MQ=255) gAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcga < 6:351034‑M1/77‑28 (MQ=255) ccAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcac > 4:330758‑M1/1‑30 (MQ=255) ccAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcac < 3:330758‑M1/140‑111 (MQ=255) tttCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccat < 5:4150‑M2/83‑60 (MQ=255) tttCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgcttcgcgcccctttcgcgacacaaggccgctcccacaaagaacgaagccat > 6:4150‑M2/1‑24 (MQ=255) ttCATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcg > 8:89303‑M1/1‑23 (MQ=255) cATTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgccacaaggccgctcccactccagacccccaggccctgcgcctcacatcctaaccaaggtcagggtgcagatccgcgtcacgcccccgccgttccaatgcgcc > 2:292676‑M1/1‑21 (MQ=255) aTTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttcc < 3:336200‑M1/140‑121 (MQ=255) aTTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttcc < 3:330824‑M1/140‑121 (MQ=255) aTTGCCACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatagcgacacaaggccgctcccactccagaccaccaggccctgcgcctgacatccaaacccagggcaggttgcagatccgcgtcacgcaccagccgttccaaaatagg > 4:330824‑M1/1‑20 (MQ=255) cACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgc < 4:229503‑M1/108‑94 (MQ=255) cACTGCATGAA‑‑‑‑CCGCcggggctgctgcgcagccctatcgcgacacaaggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgc > 3:229503‑M1/1‑15 (MQ=255) cTGCATGAC‑‑‑‑CCGCcgggggtggtgcgcagccctatcgctaaacatggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgaccaggtccg < 1:262943‑M1/149‑137 (MQ=255) acccgcgggggctgctgcgcagccctaccgcgacaaatggccgctcccactccagaccaccaggccctgcgcctcacatcctaaccaaggtcaggttgcagatccgcgtcacgcaccagcctttccaatgcgaccaggtccggtacccg < 7:26490‑M1/147‑144 (MQ=255) gccggggctgctgcgcagccctatcgcgacacaaggccgctcccactc < 2:176096‑M1/48‑47 (MQ=255) gccggggctgctgcgcagccctatcgcgacacaaggccgctcccactc > 1:176096‑M1/1‑2 (MQ=255) | CAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAA‑‑‑‑CCGC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATGCGACCAGGTCCGGTACCCG > NC_002947/5681284‑5681554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |