New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 105259	45 (0.760)	5 (0.090)	5/240	NT	10.5%	coding (53/720 nt)	cynT	carbonic anhydrase
	?	NC_002947	= 105295	43 (0.780)					coding (89/720 nt)	cynT	carbonic anhydrase

AATCTTTCACCGGTAAAATGGATTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGCGACCTGTT  >  NC_002947/105155‑105442                                                                                                                                             |                                                                                                                                                    aaTCTTTCACCGGTAAAATGGATTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTgcgctttc                                                                                                                                             >  2:19907‑M2/1‑141 (MQ=255)       tCACCGGTAAAATGGATTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCat                                                                                                                                        >  4:323202/1‑148 (MQ=255)            ggTAAAATGGATTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGtt                                                                                                                                  <  6:234968/149‑1 (MQ=255)                 aaTGGATTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTccc                                                                                                                             >  8:76396/1‑149 (MQ=255)                  aTGGATTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCt                                                                                                                            <  3:323202/149‑1 (MQ=255)                      aTTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTcc                                                                                                                              <  6:47800/143‑1 (MQ=255)                      aTTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTcc                                                                                                                              >  5:47800/1‑143 (MQ=255)                      aTTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATc                                                                                                                        <  7:76396/149‑1 (MQ=255)                       tttACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGAt                                                                                                                         >  8:208527/1‑147 (MQ=255)                          aCCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGc                                                                                                                     <  1:143487/148‑1 (MQ=255)                            cTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGc                                                                                                                     >  1:326421/1‑146 (MQ=255)                                  acCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGt                                                                                                            >  2:156328/1‑149 (MQ=255)                                  acCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGt                                                                                                            <  8:164229/149‑1 (MQ=255)                                     gTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTc                                                                                                          >  2:15027/1‑148 (MQ=255)                                     gTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTc                                                                                                          >  5:61824/1‑148 (MQ=255)                                          gagGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCaagaag                                                                                                    <  7:208527/149‑1 (MQ=255)                                             gATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAACACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTc                                                                                                 <  5:132065/149‑1 (MQ=255)                                                 aaTCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGAt                                                                                                                         >  4:200661/1‑121 (MQ=255)                                                 aaTCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGAt                                                                                                                         <  3:200661/121‑1 (MQ=255)                                                           gTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAAc                                                                                   <  2:178632/149‑1 (MQ=255)                                                              aaGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAAccc                                                                                 <  1:156328/148‑1 (MQ=255)                                                                      aTCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCa                                                                        >  4:51080/1‑149 (MQ=255)                                                                       tCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCAt                                                                       >  8:36522/1‑149 (MQ=255)                                                                                gTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCaag                                                                                                       >  2:126642/1‑108 (MQ=255)                                                                                  aCCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCt                                                            >  4:174288/1‑149 (MQ=255)                                                                                     gCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCtgtg                                                         <  2:326421/149‑1 (MQ=255)                                                                                     gCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCtgtg                                                         <  2:144463/149‑1 (MQ=255)                                                                                         gTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTgcgctttccgcggggacctgcggtacgaccttggatgggtccttgacgggcatgattcatcctcttgacggtgtgtaggtaaatccattttaccgg                                                     <  6:221432‑M2/149‑97 (MQ=255)                                                                                          tCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGAc                                                    >  7:223920/1‑149 (MQ=255)                                                                                             ccGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTgcgctttccgcggggacctgcggtacgaccttggatgggtccttgacgggcatgattcatcctcttgacggtgtgtaggtaaatccattttaccggtga                                                  <  1:67109‑M2/148‑100 (MQ=255)                                                                                                cgGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTgcgctttccgcggggacctgcggtacgaccttggatgggtccttgacgggcatgattcatcctcttgacggtgtgtaggtaaatccattt                                                           >  6:225862‑M2/1‑46 (MQ=255)                                                                                                cgGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTgcgctttccgcggggacctgcggtacgaccttggatgggtccttgacgggcatgattcatcctcttgacggtgtgtaggtaaatccattt                                                           <  5:225862‑M2/136‑91 (MQ=255)                                                                                                       cgcCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTc                                       <  3:174288/149‑1 (MQ=255)                                                                                                        gcCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTtc                                                                   >  7:119291/1‑120 (MQ=255)                                                                                                        gcCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTtc                                                                   <  8:119291/120‑1 (MQ=255)                                                                                                         ccGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTccc                                     >  7:59168/1‑149 (MQ=255)                                                                                                            aTGCTGCCCTCAAGCACATCGTCGACGGCTTCCTgcgctttccgcggggacctgcggtacgaccttggatgggtccttgacgggcatgattcatcctcttgacggtgtgtaggtaaatccattttaccggtgaaagattcaggctatgc                                  >  2:67109‑M2/1‑34 (MQ=255)                                                                                                             tgctgcCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGc                                 <  6:61824/149‑1 (MQ=255)                                                                                                                   ccTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGCTGATCa                           >  8:87372/1‑149 (MQ=255)                                                                                                                    cTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGCTGATCAc                          >  5:76678/1‑149 (MQ=255)                                                                                                                     tCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCa                                                                                                         >  6:135327/1‑69 (MQ=255)                                                                                                                     tCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCa                                                                                                         <  5:135327/69‑1 (MQ=255)                                                                                                                         gCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGc                                 <  2:88535/137‑1 (MQ=255)                                                                                                                         gCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGAGCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGc                                 >  1:88535/1‑137 (MQ=255)                                                                                                                            caTCGTCGACGGCTTCCTGCGCCTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAACACACACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCAGAGCTGATCCCCCAGAGCt                  >  5:13311/1‑149 (MQ=255)                                                                                                                              tcgtcgACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATAGTTCCCGAGCTGATCACCCAGAGCTCg                >  1:152800/1‑149 (MQ=255)                                                                                                                                gtcgACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGCTGATCAcc                         <  2:173046/138‑1 (MQ=255)                                                                                                                                gtcgACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGCTGATCAcc                         >  1:173046/1‑138 (MQ=255)                                                                                                                                  cgACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAg            >  2:46021/1‑149 (MQ=255)                                                                                                                                    aCGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGc          <  8:59168/149‑1 (MQ=255)                                                                                                                                            cTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGCGACCTGtt  <  5:31596/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                    AATCTTTCACCGGTAAAATGGATTTACCTACACACCGTCAAGAGGATGAATCATGCCCGTCAAGGACCCATCCAAGGTCGTACCGCAGGTCCCCGCGGAAAGCGCCGATGCTGCCCTCAAGCACATCGTCGACGGCTTCCTGCGCTTTCACCATGATGTTTTCCCTGATCAGCAAGAGCTGTTCAAGAAGCTCGCCACCGCGCAAACCCCACGCGCCATGTTCATCACCTGTGCCGACTCGCGCATCGTTCCCGAGCTGATCACCCAGAGCTCGCCAGGCGACCTGTT  >  NC_002947/105155‑105442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.