New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 224928 | 60 (1.020) | 5 (0.090) | 5/238 | NT | 8.6% | intergenic (+15/+103) | PP_0172/PP_0173 | ABC transporter permease/transcriptional factor‑like protein |
? | NC_002947 | = 225023 | 51 (0.930) | intergenic (+110/+8) | PP_0172/PP_0173 | ABC transporter permease/transcriptional factor‑like protein |
GTTGACTGTGCGGCGATGGGGGATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAACCACCAGCGTAATGGCCAGCCGTCACTTACC > NC_002947/224880‑225166 | gTTGACTGTGCGGCGATGGGGGATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAGAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTgtact < 7:111151‑M2/149‑6 (MQ=255) ttGACTGTGCGGCGATGGGGGATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTgtactg < 4:264833‑M2/149‑7 (MQ=255) aCTGTGCGGCGATGGGGGATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTgtactggc > 1:371955‑M2/1‑140 (MQ=255) gcgATGGGGGATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTc < 6:102042/149‑1 (MQ=255) cgATGGGGGATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCt < 7:352581/149‑1 (MQ=255) gggATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACt > 3:314346/1‑149 (MQ=255) ggATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACt > 6:148487/1‑148 (MQ=255) gATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGa < 4:189965/149‑1 (MQ=255) aTGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAg > 3:107319/1‑149 (MQ=255) aGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGt > 2:27462/1‑139 (MQ=255) aGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGt < 1:27462/139‑1 (MQ=255) gCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTg < 3:80989/149‑1 (MQ=255) cAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGACAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGc < 8:111151/149‑1 (MQ=255) ggTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTc < 5:309802/149‑1 (MQ=255) gTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCa < 8:232642/149‑1 (MQ=255) tAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTGCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTgtactggcttacctgctagcgctgcatcccccatcgccgca < 5:256888‑M2/147‑42 (MQ=255) tAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGt < 5:279560/127‑1 (MQ=255) tAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGt > 6:279560/1‑127 (MQ=255) aGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTgtactggcttacctgctagcgctgcatcccccatcgccgcacagt < 6:92680‑M2/149‑46 (MQ=255) aGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGa > 1:369254/1‑148 (MQ=255) gCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCCCAGAAt > 7:37044/1‑149 (MQ=255) aGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCt < 4:107319/149‑1 (MQ=255) gTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTg < 4:314346/149‑1 (MQ=255) cGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTgtactggcttacctgctagcgctgcatcccccatcgccgcacagtcaac < 7:190158‑M2/144‑50 (MQ=255) cGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTgtactggcttacctgctagcgctgcatcccccatcgccgcacagtcaac > 8:190158‑M2/1‑95 (MQ=255) cGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCaa > 3:90549/1‑149 (MQ=255) ggCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCAtt < 5:143712/131‑1 (MQ=255) ggCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCAtt > 6:143712/1‑131 (MQ=255) gCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAAtc > 5:361554/1‑149 (MQ=255) tCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTc < 4:90549/148‑1 (MQ=255) gCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCaa < 6:361554/149‑1 (MQ=255) ttGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCgg > 6:28446/1‑149 (MQ=255) aCGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCa < 3:264833/148‑1 (MQ=255) tAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGC‑AGCCTGCCGgcttg > 6:19547/1‑147 (MQ=255) gTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCCCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGctct < 8:37044/149‑1 (MQ=255) tCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTa > 1:326582/1‑149 (MQ=255) gCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCGTTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGcc > 6:205771/1‑132 (MQ=255) gCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCGTTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGcc < 5:205771/132‑1 (MQ=255) tCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTaccacca > 8:113149/1‑149 (MQ=255) gggATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGgctgct > 8:325134/1‑135 (MQ=255) gggATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGgctgct < 7:325134/135‑1 (MQ=255) ggATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGt > 5:348558/1‑149 (MQ=255) cGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCAt < 5:148487/148‑1 (MQ=255) gTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATg < 4:160214/148‑1 (MQ=255) tCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGc > 7:40624/1‑149 (MQ=255) ttGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTc > 8:327029/1‑148 (MQ=255) agagGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTgtactgg < 8:336548‑M2/43‑8 (MQ=255) agagGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTgtactgg > 7:336548‑M2/1‑36 (MQ=255) agagGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCaacaac < 7:327029/149‑1 (MQ=255) agagGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCaacaac > 2:98525/1‑149 (MQ=255) gaggcgcgaggcgcCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAacc > 3:91087/1‑149 (MQ=255) ggcgcgaggcgcCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAaccac < 5:28446/149‑1 (MQ=255) gcCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTacc < 2:39169/109‑1 (MQ=255) gcCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTacc > 1:39169/1‑109 (MQ=255) ccGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAACCACCAGCGTAATgg > 3:40595/1‑149 (MQ=255) cGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAACCACCAGCGTAATGGc < 6:348558/149‑1 (MQ=255) ccgcGAAAGACCCTgtactggcttacctgctagcgctgcatcccccatcgccgcacagtcaaccgctccagcgtattgaacaccagtccttccaccagcagaccgatcaggatcaccaccgccaacccggcaaagaccttgtcggtata > 6:256888‑M2/1‑14 (MQ=255) ccgcGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAACCACCAGCGTAATGGCCAGCCGt < 7:113149/149‑1 (MQ=255) aaaGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAACCACCAGCGTAATGGCCAGCCGTCACt > 3:91131/1‑148 (MQ=255) aaGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAACCACCAGCGTAATGGCCAGCCGTCACTTa < 3:6989/149‑1 (MQ=255) gACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAACCACCAGCGTAATGGCCAGCCGTCACTTAcc < 2:369254/149‑1 (MQ=255) | GTTGACTGTGCGGCGATGGGGGATGCAGCGCTAGCAGGTAAGCCAGTACCGGCCTTTTCGCGGCAGATTGACGCTAGAGTCCGCATCTGCGGGATCTTCGTCCTTGAAAGAGGCGCGAGGCGCCGAACCGCCGCGAAAGACCCTGTACTGGCTACAAATTCTGGTACTGAGCTGCCGCATTGCTCAGAATCCTGCCAATCTCTTCCCGCAAGCCGGCAGGCTGCTCTACCACCACCCTGTCCCCATGGCTCAACAACCACCAGCGTAATGGCCAGCCGTCACTTACC > NC_002947/224880‑225166 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |