New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2034207	50 (0.850)	3 (0.050)	3/244	NT	6.3%	intergenic (+23/+1418)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein
	?	NC_002947	= 2034235	42 (0.750)					intergenic (+51/+1390)	pgi‑I/PP_5477	glucose 6‑phosphate isomerase/hypothetical protein

CGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGG  >  NC_002947/2034088‑2034363                                                                                                                                                    |                                                                                                                                 cGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTc                                                                                                                                 <  4:149607‑M2/149‑2 (MQ=255)      aCCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTcgccg                                                                                                                             <  3:364413‑M2/148‑6 (MQ=255)       ccAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGa                                                                                                                           <  5:285636/149‑1 (MQ=255)                  tCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAgcgc                                                                                                                <  8:84929/149‑1 (MQ=255)                  tCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAgcg                                                                                                                 >  8:4018/1‑148 (MQ=255)                  tCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAgcg                                                                                                                 >  3:307739/1‑148 (MQ=255)                         ccTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATgg                                                                                                         <  8:205686/149‑1 (MQ=255)                          cTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATgg                                                                                                         <  8:211220/148‑1 (MQ=255)                           tGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTa                                                                                                                    >  4:239214/1‑136 (MQ=255)                           tGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTa                                                                                                                    <  3:239214/136‑1 (MQ=255)                                  cAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATa                                                                                                <  2:81475/149‑1 (MQ=255)                                   aGCGCCGTAGACGGGTCCACCCACGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGATACACTAGCGCATCATGGCGGTGAATAg                                                                                               <  2:342679/149‑1 (MQ=255)                                   aGCGCCGCTGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGCCTGACCCTGCTGCATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAg                                                                                               >  1:342679/1‑149 (MQ=255)                                     cgcCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCa                                                                                             <  4:364413/149‑1 (MQ=255)                                      gcCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGt                                                                                                     >  3:57860/1‑140 (MQ=255)                                      gcCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGt                                                                                                     <  4:57860/140‑1 (MQ=255)                                         gAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGcc                                                                                         >  6:66221/1‑149 (MQ=255)                                          aaGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCg                                                                                        <  7:284533/149‑1 (MQ=255)                                          aaGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCg                                                                                        >  7:132487/1‑149 (MQ=255)                                                 ttCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGt                                                                                                     >  5:96245/1‑129 (MQ=255)                                                 ttCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGt                                                                                                     <  6:96245/129‑1 (MQ=255)                                                     aCCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCCAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACg                                                                              >  2:311246/1‑148 (MQ=255)                                                       ccAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCag                                                                           <  3:149607/149‑1 (MQ=255)                                                        cAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGAc                                                                               >  3:177155/1‑144 (MQ=255)                                                        cAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGAc                                                                               <  4:177155/144‑1 (MQ=255)                                                                         cTTTCGTGGTACACACCGTGGCTGACCCTGCTTGCTACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACa                                                          <  8:243518/148‑1 (MQ=255)                                                                           ttCGTGGTAAACACCGTGGCTGCCCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGCGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAggg                                                       >  4:91900/1‑149 (MQ=255)                                                                            tCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGaa                                                                                                  <  1:323703/105‑1 (MQ=255)                                                                            tCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGaa                                                                                                  >  2:323703/1‑105 (MQ=255)                                                                            tCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCaa                                                            <  5:303307/143‑1 (MQ=255)                                                                            tCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCaa                                                            >  6:303307/1‑143 (MQ=255)                                                                                       acCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCg                                            >  6:199891/1‑148 (MQ=255)                                                                                         cGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAg                                         <  1:6638/149‑1 (MQ=255)                                                                                             gCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGAttt                                     >  3:263876/1‑149 (MQ=255)                                                                                                 aCCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTg                                   <  2:328560/147‑1 (MQ=255)                                                                                                   ccTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTcat                               <  8:132487/149‑1 (MQ=255)                                                                                                       cTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTcatcc                             <  4:263876/147‑1 (MQ=255)                                                                                                          gATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCatccatcc                         >  2:193999/1‑148 (MQ=255)                                                                                                            tACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCaa                       <  5:199891/148‑1 (MQ=255)                                                                                                            tACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAg                      >  3:297268/1‑149 (MQ=255)                                                                                                              cTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGt                     <  4:297268/148‑1 (MQ=255)                                                                                                                 gCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTcgccgggccagtatcaagcagggtcagccacggtgtttaccacgaaagtaattgatcaggccttgggtggaaccgtcttcggcgctgtcttccaggctaccgaccaagcgctg                 <  8:313148‑M2/149‑114 (MQ=255)                                                                                                                   ccGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTcgccgggccagtatcaagcagggtcagccacggtgtttaccacgaaagtaattgatcaggccttgggtggaaccgtcttcggcgctgtcttccaggctaccgaccaagcgctgg                <  8:160030‑M2/148‑115 (MQ=255)                                                                                                                      gcggGAGGAGCGTCCGAGCGGAGCTGGTGGTcgccgggccagtatcaagcagggtcagccacggtgtttaccacgaaagtaattgatcaggccttgggtggaaccgtcttcggcgctgtcttccaggctaccgaccaagcgctggtaaa            >  7:160030‑M2/1‑31 (MQ=255)                                                                                                                          gaggagCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTg        <  4:307739/149‑1 (MQ=255)                                                                                                                             gagCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGAt     >  6:90141/1‑149 (MQ=255)                                                                                                                               gCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGAGCATTAGCACTTGGATgg   <  5:66221/149‑1 (MQ=255)                                                                                                                                cGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATggg  >  3:54933/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                 CGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAATTACTTTCGTGGTAAACACCGTGGCTGACCCTGCTTGATACTGGCCCGGCGGGAGGAGCGTCCGAGCGGAGCTGGTGGTCGCCGGAAACACTAGCGCATCATGGCGGTGAATAGCAGGCCGCATTTCGACGCAGAGGTGGTACAGTCAACAGGGTAGGTAATTCGCAGATTTTGTCATCCATCCAAGTGCTAATGCTCTTGGATGGG  >  NC_002947/2034088‑2034363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.