| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2054923 | 51 (0.860) | 4 (0.070) | 4/242 | NT | 8.4% | coding (64/1092 nt) | aroC | chorismate synthase |
| ? | NC_002947 | = 2054952 | 39 (0.700) | coding (93/1092 nt) | aroC | chorismate synthase | |||||
CAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTC > NC_002947/2054804‑2055098 | cAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCa < 6:144111/149‑1 (MQ=255) tataCTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑t < 1:167862/147‑1 (MQ=255) tataCTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑t < 3:372502/147‑1 (MQ=255) taCTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGaa < 2:366199/149‑1 (MQ=255) ctgctTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAAttt < 7:78271/148‑1 (MQ=255) tttCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATAGCCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCt > 1:89279/1‑149 (MQ=255) tttCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCAcc > 8:30806‑M2/1‑128 (MQ=255) tttCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCAcc < 7:30806‑M2/130‑3 (MQ=255) cATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGAc < 6:160147/148‑1 (MQ=255) cATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGAc < 3:106571/148‑1 (MQ=255) ttCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑Tg > 3:352101/1‑127 (MQ=255) ttCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑Tg < 4:352101/127‑1 (MQ=255) gCAGAACTCGCGGAGCGTCCATGTCCGGGAATA‑CCTACGGGAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCAGTTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTgcagca < 1:284022/149‑1 (MQ=255) aaCTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGAcc < 2:89279/149‑1 (MQ=255) cTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCtt > 7:4732/1‑149 (MQ=255) gcgGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGAc > 2:142196/1‑149 (MQ=255) aGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGgc < 2:118326/149‑1 (MQ=255) gTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑c > 6:80291/1‑114 (MQ=255) gTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑c < 5:80291/114‑1 (MQ=255) tCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCgg < 7:233276/149‑1 (MQ=255) cGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTgc > 8:86120/1‑119 (MQ=255) cGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTgc < 7:86120/119‑1 (MQ=255) a‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCg > 2:358154/1‑149 (MQ=255) ccTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCgg < 3:265798/149‑1 (MQ=255) tACGGCAAGCTTTTCACTGTCACCACAGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGAACTGCAGCACGACCTTGACCGgc < 5:144040/127‑1 (MQ=255) tACGGAAAGCTGTTAACTGTCACCAACGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGAC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGAACGgc > 6:144040/1‑127 (MQ=255) aCGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCGCCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCgg < 1:83899/147‑1 (MQ=255) aCGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCgg > 2:83899/1‑146 (MQ=255) cAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCAcacca < 4:357510/149‑1 (MQ=255) tGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGTCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAg < 8:71374/149‑1 (MQ=255) ttCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAgcg < 4:275866/149‑1 (MQ=255) aCTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAgcgc > 6:364693/1‑147 (MQ=255) accaccGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGc > 5:267490/1‑149 (MQ=255) caccGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGcc > 2:358350/1‑148 (MQ=255) gCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCAGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCcgac > 8:307264/1‑147 (MQ=255) gCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCaa > 6:295786/1‑100 (MQ=255) gCGAGAGCCATGGCCCGGCGTTGGCCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCaa < 5:295786/100‑1 (MQ=255) gCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAAt > 3:366898/1‑148 (MQ=255) cATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcttgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagcagtata < 8:89971‑M2/149‑111 (MQ=255) tGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcttgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagca > 2:21927‑M2/1‑37 (MQ=255) tGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcttgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagca < 1:21927‑M2/142‑106 (MQ=255) tGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCttt < 1:142196/149‑1 (MQ=255) ggCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCg > 1:152933/1‑149 (MQ=255) ggTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTc < 2:152933/148‑1 (MQ=255) cA‑TTGTCGATGGATGCCCACCGGGCCGTGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGc > 1:198310/1‑149 (MQ=255) a‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGCCCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCGGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCg > 6:346020/1‑149 (MQ=255) a‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCg < 4:366898/149‑1 (MQ=255) gTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACAGCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGca < 1:358154/148‑1 (MQ=255) gatggatgCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcttgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagcagtatacagatggttgggtggcctgtgctggc > 7:89971‑M2/1‑12 (MQ=255) atgCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGgct > 5:241795/1‑149 (MQ=255) tgCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGTAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGgctg > 1:42353/1‑149 (MQ=255) ccACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTc < 5:364693/149‑1 (MQ=255) ccACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTc > 4:281108/1‑149 (MQ=255) | CAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATA‑CCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCA‑TTGTCGATGGATGCCCACCGGGCC‑TGGAAATTTCCCTCG‑CCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTC > NC_002947/2054804‑2055098 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |