New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3209806	48 (0.810)	4 (0.070)	4/234	NT	8.9%	intergenic (+67/+50)	PP_2813/PP_2814	BNR domain‑containing protein/hypothetical protein
	?	NC_002947	= 3209831	38 (0.700)					intergenic (+92/+25)	PP_2813/PP_2814	BNR domain‑containing protein/hypothetical protein

TACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGCGT  >  NC_002947/3209693‑3209969                                                                                                                                            |                                                                                                                                            tACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaa                                                                                                                                   >  7:127450‑M2/1‑139 (MQ=255)     tGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgccca                                                                                                                                        >  1:347137‑M2/1‑135 (MQ=255)     tGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgccca                                                                                                                                        <  2:347137‑M2/140‑6 (MQ=255)      gTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCaa                                                                                                                             >  2:359739/1‑149 (MQ=255)               tCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACg                                                                                                                    >  3:235802/1‑149 (MQ=255)                 aCGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGc                                                                                                                   <  7:6356/148‑1 (MQ=255)                  cGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTa                                                                                                                 <  3:274430/149‑1 (MQ=255)                  cGCAGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGACACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGc                                                                                                                   >  1:137544/1‑147 (MQ=255)                   gCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGc                                                                                                                   >  8:349765/1‑146 (MQ=255)                    ccGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTaga                                                                                                               <  3:142410/149‑1 (MQ=255)                      gAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGc                                                                                                             <  6:259879/149‑1 (MQ=255)                           gTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGATCAACGCTGGACGCTAGAGCTGaa                                                                                                         <  7:55154/149‑1 (MQ=255)                                      ccAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCa                                                                                             <  2:326727/149‑1 (MQ=255)                                      ccAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCa                                                                                             <  4:235802/149‑1 (MQ=255)                                          gAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTa                                                                                                                 <  3:139455/125‑1 (MQ=255)                                          gAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTa                                                                                                                 >  4:139455/1‑125 (MQ=255)                                                   gTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGtt                                                                                <  1:359739/149‑1 (MQ=255)                                                    ttGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTa                                                                               >  6:97211/1‑149 (MQ=255)                                                        ccACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGtt                                                                           >  3:374655/1‑149 (MQ=255)                                                         cACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGACACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGt                                                                                          >  8:147221/1‑133 (MQ=255)                                                         cACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGACACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGt                                                                                          <  7:147221/133‑1 (MQ=255)                                                            tCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGcc                                                                        >  8:267818/1‑148 (MQ=255)                                                            tCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGcc                                                                        >  4:290172/1‑148 (MQ=255)                                                              gCTCAGTAGCCAGGCATCTCAAAGCTATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCATGCCGAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCaaa                                                                     <  1:233133/149‑1 (MQ=255)                                                                tCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCATGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAgg                                                                   >  1:186012/1‑149 (MQ=255)                                                                          ggCATCGCAAACCGATGCCTGGCCTGTTTTCTTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTa                                                                                                                 >  1:50289/1‑94 (MQ=255)                                                                             aTCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCAt                                                      >  7:351763/1‑149 (MQ=255)                                                                                gCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCATGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTg                                                    <  2:186012/148‑1 (MQ=255)                                                                                 cAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTggg                                                  <  2:230160/149‑1 (MQ=255)                                                                                      cGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTAtt                                             >  8:252016/1‑149 (MQ=255)                                                                                       gATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTg                                            <  7:349765/149‑1 (MQ=255)                                                                                        aTGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTgg                                           <  3:319023/149‑1 (MQ=255)                                                                                               gcctgTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGTCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGa                                    <  2:137544/149‑1 (MQ=255)                                                                                                    ttttC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAAc                                 <  8:355459/147‑1 (MQ=255)                                                                                                       tC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAg                             >  8:266341/1‑148 (MQ=255)                                                                                                          ttGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcatta                                                      >  7:327410‑M2/1‑35 (MQ=255)                                                                                                          ttGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcatta                                                      <  8:327410‑M2/122‑88 (MQ=255)                                                                                                           tGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggt                                                               <  4:376871‑M2/112‑79 (MQ=255)                                                                                                           tGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggt                                                               >  3:376871‑M2/1‑34 (MQ=255)                                                                                                            gCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGcc                                                                 >  2:14946/1‑108 (MQ=255)                                                                                                            gCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGcc                                                                 <  1:14946/108‑1 (MQ=255)                                                                                                             ccTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGAtctt                       <  7:140206/149‑1 (MQ=255)                                                                                                                    gAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTgg                                                   <  4:274050/114‑1 (MQ=255)                                                                                                                    gAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTgg                                                   >  3:274050/1‑114 (MQ=255)                                                                                                                          gtggtCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCcgcg            >  7:341811/1‑147 (MQ=255)                                                                                                                                   gCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGCGt  <  7:252016/148‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            TACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTC‑TTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAG‑TCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGCGT  >  NC_002947/3209693‑3209969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.