| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3339138 | 34 (0.580) | 3 (0.060) | 3/212 | NT | 8.6% | intergenic (‑140/+103) | PP_2935/ybiT | membrane protein/ABC‑F family ATPase |
| ? | NC_002947 | = 3339182 | 36 (0.740) | intergenic (‑184/+59) | PP_2935/ybiT | membrane protein/ABC‑F family ATPase | |||||
CATCATGGCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGT > NC_002947/3339034‑3339330 | catcatGGCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTgg < 5:19816/149‑1 (MQ=255) gCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcggg > 5:223613‑M2/1‑142 (MQ=255) ccGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTACCAAGGCCCCACCAGCGTCCAATAACAGTTGGGGCCC‑GGTGGgagcggg < 3:61400‑M2/148‑8 (MQ=255) gTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaa > 1:91254‑M2/1‑139 (MQ=255) ggAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcg < 3:68367‑M2/146‑18 (MQ=255) ggAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcg < 3:252463‑M2/146‑18 (MQ=255) gAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGGCCCCTCTCCCAAGGCCCCCCAAGCGGCCAATAACTGTGCGGTGCC‑GGTGGgcgcgggcaagcccgcgaagc < 1:241123‑M2/149‑22 (MQ=255) cagcagGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGTATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCgg < 4:252463/149‑1 (MQ=255) agGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCTAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCAt < 1:99816/149‑1 (MQ=255) gCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATcc > 7:211671/1‑149 (MQ=255) tAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATcc > 1:68975/1‑147 (MQ=255) tAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCg‑a < 2:68975/149‑1 (MQ=255) aaTTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCGCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATgg < 7:340078/149‑1 (MQ=255) ttCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTATACCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGAAGGCCAgg > 8:62668/1‑149 (MQ=255) gccgggccgggcCGGTCGGGGGGAGGGGGATGTCCTCAGCGCGGGCTTGCCCCCTCTCCCAACGCCCCACCAGCGGCCCATTCCTGTGCGGTCCC‑TGTGCGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCAGCCG‑AGATGGCCAGGcc < 8:278795/146‑1 (MQ=25) tcgGGACGTGCCGGTCGGTGGGATGGGGATGTACGCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGGGCGGGCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGt < 7:343863/149‑1 (MQ=255) gggCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCGTGCCCGCGCGCCCCAGGCCCCCCCACCGGCCACTACCAGGGCGGGGCC‑GGGGGGGGCGGGCCACCCCGCGCCCCGGCCCGGCCCGCCG‑CGCaggccaggcccgcc > 6:10432/1‑145 (MQ=255) ccGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCat < 4:68367/149‑1 (MQ=255) cggtcggtGGGATGGGGATGTACTCTTCGCGGGCTTGCCCCCTCACCCAAGGCCCCACAACCGTCCAATACCTGTGCGGTACC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCCGCCAACCC‑AGATGGCCAGGCCGTCCCatcaatc > 2:112612/1‑148 (MQ=38) ggcaggTACTCTGCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGGCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCt < 3:171887/144‑1 (MQ=255) ggatgTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTg < 1:41531/149‑1 (MQ=255) tctTCGCGGGCTTGCCCGCACTCCCAAGGCCCCCCAAGCGGGCAAAAACAGTGGGGTCCC‑GGTGGGAGCGGGGCAGCCCGCGAAGAGGCCCGGCCCTACG‑ACATGGCCCGGCCGGCCCCTCAATACAACCCGCACACCCAGGCGACg > 8:335982/1‑147 (MQ=255) cgcgGGCGTGCCCGCGCTCCCACGGCCCCACAAGCGGCCACTACCTGTGCGGGCCC‑TGGGGGCGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAg < 5:10432/146‑1 (MQ=255) gcgGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAg > 7:50364/1‑149 (MQ=255) cgGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcgaagagtacatccccatcccaccgaccggcacggcccgacgaataattcgttagcctgctgtcttttccttcgc > 3:372647‑M2/1‑59 (MQ=255) gCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCAt > 1:160923/1‑149 (MQ=255) ttGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGGGACGCAGGTAGTCAGCg > 4:206478/1‑149 (MQ=255) gCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcgaagagtacatccccatcccaccgaccggcacggcccgacgattaattcgttagcctgctgtctttccttcgcgcaacggc < 1:67457‑M2/149‑98 (MQ=255) gCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTa > 3:162726/1‑149 (MQ=255) gttcCCAAGGGCCCACAACCCTCCAATTCCTGGGCCGTCCCGTGTGGTTG‑GGGCAATGCCGGGTATTTGCCCGGCCATTCGTTTTTGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTAc < 1:112612/147‑1 (MQ=255) ccAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCCTCGTAGGTACCGCt > 2:289194/1‑148 (MQ=255) ccAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCt < 7:62668/148‑1 (MQ=255) cAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTg > 3:41733/1‑148 (MQ=255) aaGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGaa < 8:50364/149‑1 (MQ=255) ggCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcgaagagtacatccccatcccaccgaccggcacggcccgacgattaattcgttagcctgctgtctttccttcgcgcaacggccatgatgggaccac > 2:67457‑M2/1‑38 (MQ=255) cccACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTcca > 1:286797/1‑149 (MQ=255) aaTACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagtacatc < 3:310877‑M2/149‑62 (MQ=255) aaTACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGc > 7:231088/1‑149 (MQ=255) aCCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGa < 7:335982/149‑1 (MQ=255) ccTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCTAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGa < 2:286797/148‑1 (MQ=255) ccTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagtacatcccca < 5:106338‑M2/149‑66 (MQ=255) ccTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagtacatcccca > 4:310877‑M2/1‑84 (MQ=255) cTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCAGCCGa > 1:273221/1‑147 (MQ=255) gtgCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGc > 5:209455/1‑149 (MQ=255) ggTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCCTCCG‑AGATGGCCAGGCCGTCCCATCAATCAGCCCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGCCAGCTCga > 3:43948/1‑149 (MQ=255) ccc‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTccacc > 6:84458/1‑124 (MQ=255) ccc‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTccacc < 5:84458/124‑1 (MQ=255) cc‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCgatgat > 6:218267/1‑149 (MQ=255) cc‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCgatgat < 2:28684/149‑1 (MQ=255) gtgGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGAc > 2:86284/1‑135 (MQ=255) gtgGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGAc < 1:86284/135‑1 (MQ=255) ggAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGt < 6:209455/149‑1 (MQ=255) | CATCATGGCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGT > NC_002947/3339034‑3339330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |