New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3511146 | 56 (0.950) | 5 (0.090) | 4/244 | NT | 8.7% | coding (342/522 nt) | PP_3107 | hypothetical protein |
? | NC_002947 | = 3511194 | 52 (0.920) | coding (390/522 nt) | PP_3107 | hypothetical protein |
GCTGCGCGGCTACACCCGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAGCGCCGAGTCCGGCGAACAGGAGTAACCCCTCATGTTCG > NC_002947/3511047‑3511339 | gCTGCGCGGCTACACCCGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGGCGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTg < 1:282139‑M2/149‑2 (MQ=255) gcgGCTACACCCGCATGGGCAACAAGGTCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTgccct < 1:204717‑M2/148‑6 (MQ=255) gcgGCTACACCCGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTgccct < 5:320897‑M2/148‑6 (MQ=255) cgGCTACACCCGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGAACCAGCGCCAGGCCGCCTTCATCATCAGCCACGGGCGTgccctg < 7:245161‑M2/148‑7 (MQ=255) cacCCGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGAtcttc < 7:203605/148‑1 (MQ=255) acCCGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTtctc < 5:32134/149‑1 (MQ=255) acCCGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTtctc < 1:20625/149‑1 (MQ=255) acCCGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTtctc > 6:389889/1‑149 (MQ=255) acCCGCATGGGCAACAAGGCCGGCACGCGCTCGGTTACCGCACCCCTTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTtctc < 8:287569/149‑1 (MQ=255) ccGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATGAGCCCCGGGCGTGCCCTGATCTTCTcca < 1:213473/149‑1 (MQ=255) cATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTccacca < 5:389889/149‑1 (MQ=255) aaGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGc < 2:102877/149‑1 (MQ=255) aaGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGc < 7:290811/149‑1 (MQ=255) ccGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGAc < 3:230872/149‑1 (MQ=255) cGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGt < 1:342615/149‑1 (MQ=255) ctctCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGc < 3:249168/149‑1 (MQ=255) tcGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCca < 2:144301/149‑1 (MQ=255) ggTTACCGCACCCATTGCCGGCATCCAGATCGGCGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCcagc < 2:282139/149‑1 (MQ=255) ggTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGCGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGccc < 8:121554/146‑1 (MQ=255) gTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCcag > 5:95271/1‑147 (MQ=255) cGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAAcc < 2:204717/149‑1 (MQ=255) aTTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTg < 8:103663/149‑1 (MQ=255) tGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTgg > 7:125339/1‑148 (MQ=255) cGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACa < 6:320897/149‑1 (MQ=255) ccAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCCTCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACCACCTGt > 2:207729/1‑149 (MQ=255) ccAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAAc > 3:305365/1‑130 (MQ=255) ccAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAAc < 4:305365/130‑1 (MQ=255) ccAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGAc < 6:387711/136‑1 (MQ=255) ccAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGAc > 5:387711/1‑136 (MQ=255) aGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTg < 6:95271/149‑1 (MQ=255) aTCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTACATCATCAGCCCCGGGCGTGCCCTGATCTTCACCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGc > 6:274726/1‑149 (MQ=255) gCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCtt > 3:62450/1‑149 (MQ=255) ttACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCAccc > 8:167952/1‑149 (MQ=255) aCATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCcg > 5:74361/1‑149 (MQ=255) cATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTg > 8:180903/1‑133 (MQ=255) cATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTg < 7:180903/133‑1 (MQ=255) cATGAACCACGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCcgc < 8:245161/149‑1 (MQ=255) aTGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTgccctggttcatgtaataggcgtcgatctggatgccggcaatgggtgcggtaaccgagagcgtgacggccttgttgcccatgcgggtg < 5:278874‑M2/148‑89 (MQ=255) aTGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTg < 2:249473/132‑1 (MQ=255) aTGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTg > 1:249473/1‑132 (MQ=255) aTGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCAGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGAATGGGCCAACCTGTTGGCCAGCTTCACCCcgcg > 3:65468/1‑149 (MQ=255) gAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGATGGCCAGCTTCACCCCGCGTg > 3:61120/1‑149 (MQ=255) aCCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTgccctggttcatgtaataggcgtcgatctggatgccggcaatgggtgcggtaaccgagagcgtgacggccttgttgcccatgcgggtgtagcc < 1:148471‑M2/149‑94 (MQ=255) aCCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTgccctggttcatgtaataggcgtcgatctggatgccggcaatgggtgcggtaaccgagagcgtgacggccttgttgcccatgcgggtgtagcc < 3:375488‑M2/149‑94 (MQ=255) ccAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGccc > 3:9921/1‑149 (MQ=255) gccgccCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTgccctggttcatgtaataggcgtcgatctggatgccggcaatgggtgcggtaaccgagagcgtgacggccttgttgcccatgcgggtgtagccgcgcag < 1:357219‑M2/149‑100 (MQ=255) tGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAgc > 4:80659/1‑149 (MQ=255) tACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAgcgc > 3:195677/1‑149 (MQ=255) ccAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAGCGcc > 8:54146/1‑148 (MQ=255) cAGCGCTAGTCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCTCTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGTCAACCTGTTGTCCAGCTTCTCCCCGCGTGCCCCGTCCGAATCCAGCGCCGa < 4:218040/149‑1 (MQ=255) cAGGCCGCCTTCATCATCAGCCCCGGGCGTgccctggttcatgtaataggcgtcgatctggatgccggcaatgggtgcggtaaccgagagcgtgacggccttgttgcccatgcgggtgtagccgcgcagcttggaggtgagcagcttga > 6:278874‑M2/1‑30 (MQ=255) tcatcatcaGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTg > 5:227064/1‑92 (MQ=255) tcatcatcaGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTg < 6:227064/92‑1 (MQ=255) catcatcaGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAGCGCCGAGTCCGGCGAACAGGa < 7:167952/147‑1 (MQ=255) catcatcaGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAGCGCCGAGTCCGGCGAACAGGa < 6:74361/147‑1 (MQ=255) catcatcaGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAGCGCCGAGTCCGGCGAACAGGa < 8:125339/147‑1 (MQ=255) aGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAgc > 6:280501/1‑120 (MQ=255) aGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAgc < 5:280501/120‑1 (MQ=255) gCCCCGGCCGTGCCCTGATCTTCTCCACCACTGCACAGGCAGACTTCAGTGCCCAGCAGAACCAGTACTGGGACAACCTGATGGCCAGCTTCACCCCGCGTGCCCCGACCGAAACCAGCGCCGAGTCCGGCGAACAGGAGTAAcccca > 2:342268/1‑147 (MQ=255) ccGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAgcg < 4:209790/117‑1 (MQ=255) ccGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAgcg > 3:209790/1‑117 (MQ=255) gCGTgccctggttcatgtaataggcgtcgatctggatgccggcaatgggtgcggtaaccgagagcgtgacggccttgttgcccatgcgggtgtagccgcgcagcttggaggtgagcagcttgacctggcgatcgacataggcctgcagc > 4:375488‑M2/1‑4 (MQ=255) gTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAGCGCCGAGTCCGGCGAACAGGAGTAACCCCTCATGTTCg > 1:169828/1‑147 (MQ=255) | GCTGCGCGGCTACACCCGCATGGGCAACAAGGCCGTCACGCTCTCGGTTACCGCACCCATTGCCGGCATCCAGATCGACGCCTATTACATGAACCAGGGCCGCCCGCTGTACCAGCGCCAGGCCGCCTTCATCATCAGCCCCGGGCGTGCCCTGATCTTCTCCACCACTGCACAGGCCGACTTCAGTGCCCAGCAGAACCAGGACTGGGACAACCTGTTGGCCAGCTTCACCCCGCGTGCCCCGTCCGAAACCAGCGCCGAGTCCGGCGAACAGGAGTAACCCCTCATGTTCG > NC_002947/3511047‑3511339 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |