| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4537518 = | NA (NA) | 10 (0.180) | 6/246 | NT | 34.2% | coding (853/1533 nt) | PP_4025 | transposase |
| ? | NC_002947 | = 4626625 | 20 (0.340) | coding (879/1533 nt) | PP_4091 | transposase | |||||
CCTTAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACAGCACGACTTGTCGATCAGGCGGGCCACTGGCCTGCACCCACATCCAGGATTGACTGGTCGGATCACGATCCGGCTCTTTGAGCACCTGCACGCGAGTTTCAT > NC_002947/4626483‑4626773 | ccTTAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGgcg > 2:15475/1‑148 (MQ=32) cTTAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACAGCGATAGCCCTCCA‑‑‑GCAGgcg > 5:184537/1‑147 (MQ=17) ttAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAg > 5:359663/1‑149 (MQ=32) gCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCgg > 5:248906/1‑148 (MQ=32) cTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCcgcgcgcaggagg < 7:234662‑M2/149‑14 (MQ=255) tGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCAc > 4:350492/1‑149 (MQ=32) tGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACAGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCAc > 4:260549/1‑149 (MQ=17) tGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGAAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCAc > 5:273612/1‑149 (MQ=17) cTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATCGCCCTCCA‑‑‑GCAGGCGCAg > 8:152959/1‑138 (MQ=17) ttCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTg > 3:144157/1‑149 (MQ=32) tGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTgcgc > 2:155455/1‑149 (MQ=32) cTTCGACGAATTTACGCCGGACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGGCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCaggcgcaggaggtgccgctgcgcctgc > 7:165946‑M2/1‑122 (MQ=255) cTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCgg < 5:260476/149‑1 (MQ=32) cgacgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgc > 8:234662‑M2/1‑119 (MQ=255) gacgaGTTTACGCCGGACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCACCAGCcgcgcgcaggaggtgccgctgcgcctgc > 3:348555‑M2/1‑121 (MQ=255) gacgaATTTACGCCGGACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCagccgcgcgcaggaggtgccgctgcgcctgc > 6:193609‑M2/1‑118 (MQ=255) cgaATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCACCAGCcgcgcgcaggaggtgccgctgcgcctgctg > 5:85593‑M2/1‑119 (MQ=255) gaATTTACGCCGGACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGTTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagg > 7:242164‑M2/1‑115 (MQ=255) aaTTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTggtggt < 1:155455/149‑1 (MQ=32) tttACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggtgagat > 7:235768/1‑145 (MQ=17) tttACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggt < 8:235768/144‑1 (MQ=32) aCGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTaa < 5:156862/148‑1 (MQ=32) gcggAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATc > 7:352450/4‑148 (MQ=14) gCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATc > 7:352446/1‑148 (MQ=32) cGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggtg > 4:142680/1‑138 (MQ=32) cGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCtggtg < 3:142680/138‑1 (MQ=32) gAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGa < 4:160065/147‑1 (MQ=31) gAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGa > 3:160065/1‑147 (MQ=31) gAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAAc < 4:358896/149‑1 (MQ=31) gCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctgga > 5:284875‑M2/1‑73 (MQ=255) gCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctgga < 6:284875‑M2/105‑33 (MQ=255) cccGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GC < 2:110692‑M2/72‑1 (MQ=255) cccGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GC > 1:110692‑M2/1‑72 (MQ=255) gTAACCGCGATAGCCCTCCA‑‑‑GCaggcgcagcggcacctcctgcgcgcggctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatg < 1:167904‑M2/149‑128 (MQ=255) ccA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtc > 1:58440‑M2/1‑5 (MQ=255) cA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcg > 6:260389‑M2/1‑4 (MQ=255) cA‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtc < 3:350350‑M2/148‑145 (MQ=255) a‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgt < 3:299063‑M2/118‑116 (MQ=255) a‑‑‑GCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgt > 4:299063‑M2/1‑3 (MQ=255) gCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgctttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaa > 8:16328‑M2/1‑2 (MQ=255) gCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaa > 3:208186‑M2/1‑2 (MQ=255) gCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaa > 6:338985‑M2/1‑2 (MQ=255) gCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaa > 3:123367‑M2/1‑2 (MQ=255) gCcgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaa > 7:90203‑M2/1‑2 (MQ=255) ccgcgcgcaggaggtgccgctgcgcctgctggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaag < 5:194459‑M2/149‑149 (MQ=255) | CCTTAGGCTGCACCTTCTGCGCTTCGACGAATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCA‑‑‑GCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACAGCACGACTTGTCGATCAGGCGGGCCACTGGCCTGCACCCACATCCAGGATTGACTGGTCGGATCACGATCCGGCTCTTTGAGCACCTGCACGCGAGTTTCAT > NC_002947/4626483‑4626773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |