New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4706389 | 58 (0.980) | 4 (0.070) | 4/244 | NT | 6.8% | coding (103/1053 nt) | PP_4162 | membrane protein |
? | NC_002947 | = 4706417 | 55 (0.980) | coding (75/1053 nt) | PP_4162 | membrane protein |
GGATCCAGGCCATGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTGTAGGCGCGCTGCCGACTTCAAGACG > NC_002947/4706287‑4706560 | ggATCCAGGCCATGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAggccg < 8:312101/149‑1 (MQ=255) ggATCCAGGCCATGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAggccg < 4:307978/149‑1 (MQ=255) gATCCAGGCCATGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGTAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAggccgg > 4:41265/1‑149 (MQ=255) aGGCCATGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGcccc > 3:130345/1‑148 (MQ=255) gCCATGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAg > 2:211264/1‑149 (MQ=255) aTGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCaa > 2:161757/1‑149 (MQ=255) tGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTg > 7:125403‑M2/1‑119 (MQ=255) tGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTg < 8:125403‑M2/120‑2 (MQ=255) tGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAAt < 3:231789/149‑1 (MQ=255) tCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGc > 4:255378/1‑148 (MQ=255) agcagGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGccac > 1:361200/1‑149 (MQ=255) agcagGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGccac < 2:293715/149‑1 (MQ=255) cagGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGccac > 4:354141/1‑147 (MQ=255) cagGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGAAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCCCAGGCCGGCCCCCAGCAATGccacca > 8:244786/1‑149 (MQ=255) ggCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACcagc < 4:130345/149‑1 (MQ=255) ccGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACcag > 1:181938/1‑146 (MQ=255) cggcggCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAAt < 6:237038/137‑1 (MQ=255) cggcggCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAAt > 5:237038/1‑137 (MQ=255) gcggcCAGCGTCTCGCGACCGCCCAGTAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAAt < 3:41265/149‑1 (MQ=255) cggcCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATc < 1:161757/149‑1 (MQ=255) ggcCAGCGTCTCGCGACCGGCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGTAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCt < 8:247420/149‑1 (MQ=255) gcCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTg < 2:181938/149‑1 (MQ=255) ccAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCa < 3:341016/126‑1 (MQ=255) ccAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCa > 4:341016/1‑126 (MQ=255) cAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCCCAGGCCGGCCCCCAGCAATGCCCCCAGCAGAATCTGGa > 1:23067/1‑149 (MQ=255) ctcGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACaag > 2:23702/1‑147 (MQ=255) gcgACCGCCCAGCAGGGGCGTAATAATGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCAACAGCAATGCCGATATGATGGGTGCCATAACCCAAAGGCCGGCCCCCAGCTATGCCACCAGCAGAATCTGGACcagcag < 1:23702/147‑1 (MQ=255) gcgACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGccac < 6:136027/126‑1 (MQ=255) gcgACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGccac > 5:136027/1‑126 (MQ=255) cgACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCg < 3:354141/149‑1 (MQ=255) cgACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCg < 3:334159/149‑1 (MQ=255) gccGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGa < 7:197507/147‑1 (MQ=255) gCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCAt > 6:129797/1‑149 (MQ=255) cccAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCAtt < 5:179984/149‑1 (MQ=255) cagGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTaa < 5:129797/149‑1 (MQ=255) agGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAAc < 3:129322/149‑1 (MQ=255) cgTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAAGGCCGATATGAAGGGTGCCATCCCCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCAt > 5:310534/1‑147 (MQ=255) tAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAgg > 7:3963/1‑149 (MQ=255) aaGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCt > 3:333026/1‑149 (MQ=255) cgcATCACCGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATCTGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGt < 2:126853/149‑1 (MQ=255) gcATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGtt > 1:161471/1‑149 (MQ=255) cATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTc < 2:361200/149‑1 (MQ=255) aTCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTg > 4:344675/1‑126 (MQ=255) aTCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTg < 3:344675/126‑1 (MQ=255) aaCGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAg < 8:3963/148‑1 (MQ=255) cTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGtt > 5:217571/1‑148 (MQ=255) cTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGtt > 5:212327/1‑148 (MQ=255) gCAAATGCCATGATGGCGCCCCACATCAATGCCGATATTTATGGTGCCATAACCCACATGCCGGGCCCCACCAATTGCACCATGATAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCaa < 3:255378/148‑1 (MQ=255) gCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAg < 8:215521/149‑1 (MQ=255) cAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTgccatcctggcctttgccagctggccgttgatgcgctttcttacgcgcctgctgggcggtcgcgagacgctggccgccggcctgctgaccatggcctggatcctgatcgtgg < 1:375674‑M2/149‑113 (MQ=255) ggATGGCGCCCCACAGCAATGCCGATATGAAGGGTgccatcctggcctttgccagctggccgttgatgcgctttcttacgcgcctgctgggcggtcgcgagacgctggccgccggcctgctgaccatggcctggatcctgatcgtggca < 3:119713‑M2/149‑115 (MQ=255) gATGGCGCCCCACAGCAATGCCGATATGAAGGGTgccatcctggcctttgccagctggccgttgatgcgctttcttacgcgcctgctgggcggtcgcgagacgctggccgccggcctgctgaccatggcctggatcctgatcgtggcac < 1:151504‑M2/149‑116 (MQ=255) aTGGCGCCCCACAGCAATGCCGATATGAAGGGTgccatcctggcctttgccagctggccgttgatgcgctttcttacgcgcctgctgggcggtcgcgagacgctggccgccggcctgctgaccatggcctggatcctgatcgtggcact < 7:225074‑M2/149‑117 (MQ=255) gcgcCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTg < 2:161471/148‑1 (MQ=255) aGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTGTAGGCGCGCt > 7:107715/1‑149 (MQ=255) aaTGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTGTAGGCGCGCTGcc > 3:312208/1‑149 (MQ=255) ccGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTGTAGGCGCGCTGCCGAc < 6:212327/148‑1 (MQ=255) ccGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTGTAGGCGCGCTGCCGAc < 6:217571/148‑1 (MQ=255) ccGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTGTAGGCGCGCTGCCGAc < 4:333026/148‑1 (MQ=255) gAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTGTAGGCGCGCTGCCGACTTCAAGAc > 2:66578/1‑149 (MQ=255) aaGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTGTAGGCGCGCTGCCGACTTCAAGACg > 2:48046/1‑149 (MQ=255) | GGATCCAGGCCATGGTCAGCAGGCCGGCGGCCAGCGTCTCGCGACCGCCCAGCAGGCGCGTAAGAAAGCGCATCAACGGCCAGCTGGCAAAGGCCAGGATGGCGCCCCACAGCAATGCCGATATGAAGGGTGCCATCACCCACAGGCCGGCCCCCAGCAATGCCACCAGCAGAATCTGGACCAGCAGGCGATCATTGTTAACCATGAGGGTGCTCGTTCAAGGGATCAGTTCAAGGTGCAGGCCGTCTGTAGGCGCGCTGCCGACTTCAAGACG > NC_002947/4706287‑4706560 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |