New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5612889 | 45 (0.760) | 6 (0.110) | 6/244 | NT | 11.7% | coding (711/813 nt) | PP_4932 | D‑arabinose 1‑dehydrogenase |
? | NC_002947 | = 5612906 | 48 (0.850) | coding (728/813 nt) | PP_4932 | D‑arabinose 1‑dehydrogenase |
GCAGAACGCCCGGTGCTGGACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCAAGGAGGAGCCTCGTG > NC_002947/5612761‑5613052 | gCAGAACGCCCGGTGCTGGACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTcag < 7:60165‑M2/149‑4 (MQ=255) aCGCCCGGTGCTGGACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTg < 1:201004/149‑1 (MQ=255) aCGCCCGGTGCTGGACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTg < 5:135335/149‑1 (MQ=255) ggTGCTGGACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGt > 6:109497/1‑142 (MQ=255) ggTGCTGGACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGt < 5:109497/142‑1 (MQ=255) tGGACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCgg > 6:157891/1‑148 (MQ=255) gACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCa < 7:137472/148‑1 (MQ=255) gACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTAGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCa < 5:276536/148‑1 (MQ=255) cGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATc > 2:294868/1‑148 (MQ=255) gCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCaa < 4:252423/149‑1 (MQ=255) cGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATc > 8:263490/1‑142 (MQ=255) cGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATc < 7:263490/142‑1 (MQ=255) cAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTgg < 7:206951/149‑1 (MQ=255) cATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCcac > 3:288041/1‑148 (MQ=255) aTCCTGGTAAAAACGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACaa > 2:316749/1‑149 (MQ=255) tGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTg > 5:198783/1‑149 (MQ=255) ggTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCCACCCGTTGCACCTGGCCCACAACGTgg > 5:386133/1‑149 (MQ=255) gTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGGTGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTgg < 1:103377/149‑1 (MQ=255) aaaaGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTg > 6:342219/1‑143 (MQ=255) aaaaGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTg < 5:342219/143‑1 (MQ=255) aGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTc < 5:157891/149‑1 (MQ=255) cTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGccc > 3:301415/1‑149 (MQ=255) cTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGccc < 3:194848/149‑1 (MQ=255) ggCGAGCGGGCATAGCTGCCTGGCCCCGGGTGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCg < 4:283454/147‑1 (MQ=255) ggCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGc < 1:291175/108‑1 (MQ=255) ggCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGc > 2:291175/1‑108 (MQ=255) ggCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGc > 3:49977/1‑149 (MQ=255) tCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCAt > 2:326573/1‑149 (MQ=255) cTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCAtt > 6:220502/1‑149 (MQ=255) ccTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAg > 7:169105/1‑149 (MQ=255) gCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGtt < 8:60165/147‑1 (MQ=255) gCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTAc < 8:38759/149‑1 (MQ=255) tCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTcc < 8:169105/149‑1 (MQ=255) tCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTcc < 4:49977/149‑1 (MQ=255) aCCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGa > 1:47612/1‑149 (MQ=255) aCCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACATCAGGCTCCCg > 8:173580/1‑148 (MQ=255) ggTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCa < 7:173580/149‑1 (MQ=255) aGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCTGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGAc < 1:316749/149‑1 (MQ=255) gCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTa < 6:178242/103‑1 (MQ=255) gCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTa > 5:178242/1‑103 (MQ=255) cAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGaa < 5:220502/149‑1 (MQ=255) cTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTcagcagctcgaagctggcctgcaccgggtcgacgcccggggccaggcagatatgcccgctcgccaaggccttttttaccaggatggccttgccgtgttcggcagcgtagtccagcaccg < 8:265859‑M2/149‑120 (MQ=255) aGCTGCTGTTCGCCCACCCGG‑GCGTcagcagctcgaagctggcctgcaccgggtcgacgcccggggccaggcagatatgcccgctcgccaaggccttttttaccaggatggccttgcc > 6:33495‑M2/1‑25 (MQ=255) aGCTGCTGTTCGCCCACCCGG‑GCGTcagcagctcgaagctggcctgcaccgggtcgacgcccggggccaggcagatatgcccgctcgccaaggccttttttaccaggatggccttgcc < 5:33495‑M2/118‑94 (MQ=255) gctgctGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGAccc > 4:110234/1‑149 (MQ=255) gctgTTCGCCCACCCGG‑GCGTcagcagctcgaagctggcctgcaccgggtcgacgcccggggccaggcagatatgcccgctcgccaaggccttttttaccaggatggccttgccgtgttc < 2:215613‑M2/120‑100 (MQ=255) gctgTTCGCCCACCCGG‑GCGTcagcagctcgaagctggcctgcaccgggtcgacgcccggggccaggcagatatgcccgctcgccaaggcctctttttaccaggatggccttgccgtgttc > 1:215613‑M2/1‑21 (MQ=255) ctgTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAg < 3:357175/128‑1 (MQ=255) ctgTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAg > 4:357175/1‑128 (MQ=255) ctgTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGAc < 4:288041/148‑1 (MQ=255) ttCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCaa < 5:369425/149‑1 (MQ=255) cGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCAag < 6:277596/148‑1 (MQ=255) gCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCAagga < 3:110234/149‑1 (MQ=255) cccTCCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCAaggag > 2:102638/1‑149 (MQ=255) cccACCCGG‑GCGTCAGCAGTGCTATTGTCTGCACCATCAACCCGTTGCACCAGGCCCACAACGTGGCCACCGTCGCCCGTATCCAGGGCCACCATTGAGTTAc > 6:297178/1‑103 (MQ=255) cccACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCGGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTag < 5:297178/103‑2 (MQ=255) cccACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGTATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCAaggag < 1:294868/149‑1 (MQ=255) cGG‑GCGTcagcagctcgaagctggcctgcaccgggtcgacgcccggggccaggcagatatgcccgctcgccaaggccttttttaccaggatggccttgccgtgttcggcagcgtagtccagcaccgggcgttctgcctgttcgttgagg > 7:265859‑M2/1‑7 (MQ=255) gg‑gCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCAAGGAGGAGCCTc > 6:371101/1‑149 (MQ=255) g‑gCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCAAGGAGGAGCCTCg < 2:47612/149‑1 (MQ=255) cGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCAAGGAGGAGCCTCGTg < 5:371101/149‑1 (MQ=255) | GCAGAACGCCCGGTGCTGGACTACGCTGCCGAACACGGCAAGGCCATCCTGGTAAAAAAGGCCTTGGCGAGCGGGCATATCTGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGG‑GCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACTGAAGACTGACCCGACGCAAGGAGGAGCCTCGTG > NC_002947/5612761‑5613052 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |