New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5936586	59 (1.000)	3 (0.050)	3/246	NT	5.3%	coding (103/960 nt)	yhiI	translation‑like protein
	?	NC_002947	= 5936605	50 (0.880)					coding (122/960 nt)	yhiI	translation‑like protein

ACCGCAAGGATGCAGAACGATGAACCGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTGGCGCGCATCGACACCCGCACCATGGAAGCCCAGCGCAGCCAG  >  NC_002947/5936465‑5936753                                                                                                                                              |                                                                                                                                                     aCCGCAAGGATGCAGAACGATGAACCGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGgcgc                                                                                                                                               <  2:58562/148‑1 (MQ=255) aCCGCAAGGATGCAGAACGATGAACCGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGgcgc                                                                                                                                               <  2:198742/148‑1 (MQ=255)  ccGCAAGGATGCAGAACGATGAACCGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCACTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCt                                                                                                                                             <  3:65325/149‑1 (MQ=255)  ccGCAAGGATGCAGAACGATGAACCGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCACTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCt                                                                                                                                             >  4:65325/1‑149 (MQ=255)              aGAACGATGAACCGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCg                                                                                                                                  >  2:88662/1‑148 (MQ=255)                aaCGATGAACCGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAg                                                                                                                               >  3:137288/1‑149 (MQ=255)                    aTGAACCGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCa                                                                                                                           <  5:299596/149‑1 (MQ=255)                         ccGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCg                                                                                                                      >  2:256852/1‑149 (MQ=255)                          cGATATCCCCCTACAATCTTCGCCACTGCAATGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCAcc                                                                                                                                   <  8:307597/135‑1 (MQ=255)                           gATATGCCCTTCTAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGcc                                                                                                                    <  1:130009/149‑1 (MQ=255)                                 ccccTCGAATCTTCGCCCCTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGGCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCaa                                                                                                               <  2:363888/148‑1 (MQ=255)                                    cTAGAATGTTCTCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCTGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATc                                                                                                           <  7:345079/149‑1 (MQ=255)                                    cTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGc                                                                                                                            <  7:200210/132‑1 (MQ=255)                                    cTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGc                                                                                                                            >  8:200210/1‑132 (MQ=255)                                        aaTCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCg                                                                                                       <  4:137288/149‑1 (MQ=255)                                         aTCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCACACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCg                                                                                                       <  1:88662/149‑1 (MQ=255)                                         aTCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCgg                                                                                                      <  6:299635/149‑1 (MQ=255)                                          tCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGt                                                                                                     >  1:297162/1‑149 (MQ=255)                                                   ctgcactgATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGACGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCGGGcg                                                                                            >  8:93922/1‑148 (MQ=255)                                                      cactgATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCg                                                                                           >  8:277318/1‑147 (MQ=255)                                                           aTCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTAc                                                                                     <  6:129988/148‑1 (MQ=255)                                                              gCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCa                                                                                                                   <  4:10136/115‑1 (MQ=255)                                                               cACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTc                                                                                <  4:235942/149‑1 (MQ=255)                                                                aCTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTc                                                                                >  7:61211/1‑148 (MQ=255)                                                                 cTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGcc                                                                                                                    >  1:2008/1‑111 (MQ=255)                                                                 cTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGGTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGcc                                                                                                                    <  2:2008/111‑1 (MQ=255)                                                                  tGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGc                                                                                                                 >  6:83933/1‑113 (MQ=255)                                                                  tGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGc                                                                                                                 <  5:83933/113‑1 (MQ=255)                                                                    cTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCa                                                                                                                           <  6:113402/101‑1 (MQ=255)                                                                    cTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCa                                                                                                                           >  5:113402/1‑101 (MQ=255)                                                                    cTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATg                                                                            >  7:308177/1‑148 (MQ=255)                                                                       gCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGaa                                                                          <  4:189277/147‑1 (MQ=255)                                                                       gCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAg                                                                         <  2:297162/148‑1 (MQ=255)                                                                           cAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGa                                                                     <  6:145623/148‑1 (MQ=255)                                                                                 gcggGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGa                                                                     >  2:66965/1‑142 (MQ=255)                                                                                 gcggGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGa                                                                     <  1:66965/142‑1 (MQ=255)                                                                                           gTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGc                                                     >  4:126194/1‑148 (MQ=255)                                                                                              cTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGc                                                 <  7:277318/149‑1 (MQ=255)                                                                                                 gAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTg                                                                                   <  7:277175/112‑1 (MQ=255)                                                                                                 gAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTAc                                              <  1:256852/149‑1 (MQ=255)                                                                                                 gAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCACCAAGATCACCGGTCGCCTGGCCGAAGTACTg                                                                                   >  8:277175/1‑112 (MQ=255)                                                                                                   aGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTg                                            >  3:253835/1‑149 (MQ=255)                                                                                                    gTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGCTCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTgg                                           >  3:43295/1‑149 (MQ=255)                                                                                                       gCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTg                                                       <  2:82874/134‑1 (MQ=255)                                                                                                       gCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTg                                                       >  1:82874/1‑134 (MQ=255)                                                                                                        cTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAAc                                                                 <  7:89715/123‑1 (MQ=255)                                                                                                        cTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGACGAAGTACTGGTCGATGAAGGCGACAAc                                                                 >  8:89715/1‑123 (MQ=255)                                                                                                          ccACGGCCAGTTGCCCGAAGGCCTGAGCATGGGCA‑Acgggcaactggtcgtggagcgacttccagtaccccagcccgccggctgcagcgagcagtgcgatcagtgcagtggcgaa                                                                       <  1:353659‑M2/115‑80 (MQ=255)                                                                                                          ccACGGCCAGTTGCCCGAAGGCCTGAGCATGGGCA‑Acgggcaactggtcgtggagcgacttccagtaccccagcccgccggctgcagcgagcagtgcgatcagtgcagtggcgaa                                                                       >  2:353659‑M2/1‑36 (MQ=255)                                                                                                            aCGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGc                                                                                                                 <  7:39902/71‑1 (MQ=255)                                                                                                            aCGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGc                                                                                                                 >  8:39902/1‑71 (MQ=255)                                                                                                              gACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑Acgggcaactggtcgtggagcgacttccagtaccccagcccgccggctgcagcgagcagtgcgatcagtgcagtggcgaagattctaggggcatatcggttcatcgttctgcatcctt                                 <  3:63888‑M2/149‑118 (MQ=255)                                                                                                                    ttGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTGGCGCGCATCGACACCCg                           >  3:170618/1‑149 (MQ=255)                                                                                                                       cccGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTGGCGCGCATCGACACCCGCAc                        >  8:290437/1‑149 (MQ=255)                                                                                                                               ccTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTGGCGCGCATCGACACCCGCACCATGGAAg                >  2:178380/1‑149 (MQ=255)                                                                                                                                cTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTGGCGCGCATCGACACCCGCACCATGGAAGc               >  2:297682/1‑149 (MQ=255)                                                                                                                                   aGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTGGCGCGCATCGACACCCGCACCATGGAAGcc              <  4:253835/147‑1 (MQ=255)                                                                                                                                          gCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTGGCGCGCATCGACACCCGCACCATGGAAGCCCAGCGCAGc     <  3:126194/149‑1 (MQ=255)                                                                                                                                              aCGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGCTCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTGGCGCGCATCGACACCCGCACCATGGAAGCCCAGCGCAGCCAg  >  8:324748/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                     ACCGCAAGGATGCAGAACGATGAACCGATATGCCCCTAGAATCTTCGCCACTGCACTGATCGCACTGCTCGCTGCAGCCGGCGGGCTGGGGTACTGGAAGTCGCTCCACGACCAGTTGCCCGAAGGCCTGAGCATGGGCA‑ACGGGCGCCTGGAAGCCACCGAAGTGCAGATCGCCAGCAAGATCCCCGGTCGCCTGGCCGAAGTACTGGTCGATGAAGGCGACAACGTGATCCGTGGCCAGCTACTGGCGCGCATCGACACCCGCACCATGGAAGCCCAGCGCAGCCAG  >  NC_002947/5936465‑5936753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.