Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_002947	5,985,398	Δ11 bp	coding (188‑198/405 nt)	PP_5244 ←	AraC family transcriptional regulator

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5985398	5985408	11	39 [0]	[0] 39	PP_5244	AraC family transcriptional regulator

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5985397	0 (0.000)	38 (1.490)	34/286	0.0	100%	coding (199/405 nt)	PP_5244	AraC family transcriptional regulator
	?	NC_002947	5985409 =	0 (0.000)					coding (187/405 nt)	PP_5244	AraC family transcriptional regulator

GCACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5985252‑5985397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACAT  >  NC_002947/5985409‑5985553                                                                                                                                                                                                                                                                                                     GCACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAA                                                                                                                                                 >  7:64101/1‑148   ACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATG                                                                                                                                               >  3:103353/1‑148     GGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGC                                                                                                                                             >  8:14581/1‑148                        ACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATAC                                                                                                                          >  5:120169/1‑148                        ACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCC‑TTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGATGCGGGTAAGGTTGCATACC                                                                                                                         >  2:75187/1‑148                          AAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCG                                                                                                                        >  1:58218/1‑148                           AAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGC                                                                                                                       >  7:59515/1‑148                                   ATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCT                                                                                                               <  2:82876/148‑1                                       CAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGA                                                                                                            <  7:62486/147‑1                                           CTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATC                                                                                                       <  5:52936/148‑1                                              ACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGA                                                                                                     >  6:66867/1‑147                                                    GTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGG                                                                                              <  3:22121/148‑1                                                     TGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGC                                                                                             <  1:87087/148‑1                                                        TAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTAT                                                                                          <  2:68647/148‑1                                                        TAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTAT                                                                                          <  5:58628/148‑1                                                        TAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGG                                                                                                                     >  6:66921/1‑121                                                         AGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGC                                                                                                                    <  5:66921/121‑1                                                           GCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCA                                                                                       >  6:85906/1‑148                                                                    TTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCT                                                                              >  8:33000/1‑148                                                                        AAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTT                                                                          >  8:94413/1‑148                                                                           CAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGTTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGC                                                                       <  2:96473/148‑1                                                                              GCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCG                                                                    >  1:126085/1‑148                                                                                GCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGGTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGC                                                                  <  3:40624/148‑1                                                                                       CTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCG                                                           >  5:33485/1‑148                                                                                        TTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGTGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATC                                                                                  >  2:93776/1‑124                                                                                        TTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGC                                                          >  5:74282/1‑148                                                                                         TTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGTGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCA                                                                                 <  1:93776/124‑1                                                                                            CCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGA                                                                                                     >  2:10230/1‑101                                                                                             ctTGCGCGCCAGCAGGCGACAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCGGCGGGTAAGGTTGCATCCCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGG                                                      <  6:114820/145‑1                                                                                             CATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGG                                                     >  6:22763/1‑148                                                                                             CATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGAC                                                                                                    <  1:10230/101‑1                                                                                              ATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGC                                                    >  1:13527/1‑148                                                                                                            GCGCCAGGCCTGCGGCGAAAGGCCGGTGTGGACTTTGAAAATGGCTGCGGGTAAGGTGGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTCGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGG                                      <  5:99644/148‑1                                                                                                                CAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTT                                  >  4:59038/1‑148                                                                                                                             AAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTT                     >  4:55587/1‑148                                                                                                                             AAAGGCCGGTGTTGACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTT                     >  1:150091/1‑148                                                                                                                                           ACTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGG        <  1:119167/147‑1                                                                                                                                            CTTTGAAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGG       <  7:100398/147‑1                                                                                                                                                 AAAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACAT  <  2:58218/147‑1                                                                                                                                                                                                                                                                                                     GCACGGGTGAAATGGGCCTGGTCACAAAAGCCGCATTCCAGGCTCACGTGGGTGATAGGCGCCTCGGTTGCAAGCAAGCGCTTGGCCTTTTCCATGCGCGCCAGCAGGCGCCAGGCCTGCGGCGAAAGGCCGGTGTTGACTTTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5985252‑5985397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaAATGGCTGCGGGTAAGGTTGCATACCGCGGCGATCTCGATGATCGACAACGGGCTATGCAACATCAGCTCCTTGGCCCGGCGCAGCCGCGCGGGCGTGAGTGCGCCGGGGGTTTGCAGCGGCGCTTCGGGCGTCCCAGGGTACAT  >  NC_002947/5985409‑5985553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.