New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 83475	59 (0.980)	3 (0.050)	3/248	NT	5.2%	coding (215/912 nt)	hemF	coproporphyrinogen‑III oxidase
	?	NC_002947	= 83505	55 (0.980)					coding (245/912 nt)	hemF	coproporphyrinogen‑III oxidase

CTCTGCCCTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGCCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/83320‑83475 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgccAGTTCGGGACGGTGGGCACTGGCCGACGGCGGCAGGCCGCTACCAAACACATGGGAGAAGTTGACCCCGCCTTTTTCGATCACGTTGCCCTCACCGATAACCCGCGTGCGGCCCCCGCCACCGGCTTCGCGCACCCAGGCGTCCTCGA  <  NC_002947/83505‑83358                                                                                                                                                                                                                                                                                                                    CTCTGCCCTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGGCGCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGC                                                                                                                                                              <  1:280439/149‑1 CTCTGCCCTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCG                                                                                                                                                             >  5:336240/1‑149    TGCCCTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGG                                                                                                                                                            <  1:228204/147‑1    TGCCCTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGG                                                                                                                                                            <  2:62151/147‑1       CCTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGCCTGC                                                                                                                                                       >  1:19073/1‑149       CCTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGGTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGCCTGC                                                                                                                                                       >  7:243793/1‑149       CCTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGAGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGAGATCGAATAAGGCGGGGTCAGCTTATCCCATGTGTATGGTAGCGGCCTGC                                                                                                                                                       >  8:307116/1‑149        CTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGCCT                                                                                                                                                         >  2:159493/1‑146        CTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGCCT                                                                                                                                                         <  1:159493/146‑1         TCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCTTGGGTGCGCGGAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGCCTGCC                                                                                                                                                      >  1:279555/1‑149                                              CGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTGGCGGCCTGCCAGTTCGGGACGGTGGGCACTGGCCGACGGCGGCAGGCC                                                                                                                <  1:349554/149‑1                                                 CTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGC                                                                                                                                                           >  3:346532/1‑103                                                 CTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGC                                                                                                                                                           <  4:346532/103‑1                                                                      GCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGCCTGCCAGTTCGGGACGGTGGGCACTGGCCGACGGCGGCAGGCCGC                                                                                                              >  2:233386/1‑128                                                                      GCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGCCTGCCAGTTCGGGACGGTGGGCACTGGCCGACGGCGGCAGGCCGC                                                                                                              <  1:233386/128‑1                                                                                                                                                         CCTGCCAGTTCGGGACGGTGGGCACTGGCCGACGGCGGCAGGCCGCTACCAAACACATGGGAGAAGTTGACCCCGCCTTTTTCGATCACGTTGCCCTCACCGATAACCCGCGTGCGGCCCCCGCCACCGGCTTCGCGCACCCAGGCGTC       <  3:107971/149‑1                                                                                                                                                          CTGCCAGTTCGGGACGGTGGGCACTGGCCGACGGCGGCAGGCCGCTACCAAACACATGGGAGAAGTTGACCCCGCCTTTTTCGATCACGTTGCCCTCACCGATAACCCGCGTGCGGCCCCCGCCACCGGCTTCGCGCACCCAGGCGTCC      >  4:106525/1‑149                                                                                                                                                             CCAGTTCGGGACGGTGGGCACTGGCCGACGGCGGCAGGCCGCTACCAAACACATGGGAGAAGTTGACCCCGCCTTTTTCGATCACGTTGCCCTCACCGATAACCCGCGTGCGGCCCCCGCCACCGGCTTCGCGCACCCAGGCGTCCTC    >  7:291150/1‑148                                                                                                                                                              CAGTTCGGGACGGTGGGCACTGGCCGACGGCGGCAGGCCGCTACCAAACACATGGGAGAAGTTGACCCCGCCTTTTTCGATCACGTTGCCCTCACCGATAACCCGCGTGCGGCCCCCGCCACCGGCTTCGCGCACCCAGGCGTCCTCGA  <  4:194752/149‑1                                                                                                                                                                                                                                                                                                                    CTCTGCCCTCGAAACAGAAGACGGCGGTGCCCGCTTCGTCGAGGACGCCTGGGTGCGC‑GAAGCCGGTGGCGGGGGCCGCACGCGGGTTATCGGTGAGG‑GCAACGTGATCGAAAAAGGCGGGGTCAACTTCTCCCATGTGTTTGGTAGCGGCCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/83320‑83475 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgccAGTTCGGGACGGTGGGCACTGGCCGACGGCGGCAGGCCGCTACCAAACACATGGGAGAAGTTGACCCCGCCTTTTTCGATCACGTTGCCCTCACCGATAACCCGCGTGCGGCCCCCGCCACCGGCTTCGCGCACCCAGGCGTCCTCGA  <  NC_002947/83505‑83358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.