New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	235320 =	69 (1.150)	14 (0.250)	7/246	NT	17.7%	intergenic (+17/+108)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235401 =	66 (1.190)					intergenic (+98/+27)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase

AGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/235477‑235320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaCGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAAACA  >  NC_002947/235401‑235546                                                                                                                                                                                                                                                                                                                    AGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTATTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCAT                                                                                                                                                              <  2:230497/149‑1                                                                             GTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGG                                                                                    >  3:227016/1‑147                                                                                                 CCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACG                                                                                     >  8:262076/1‑126                                                                                                 CCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACG                                                                                     <  7:262076/126‑1                                                                                                 CCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCAGTGGGCGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCCGCGC                                                              >  3:365364/1‑149                                                                                                 CCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCGTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCGGCACGCACCTGCGCCGGCGC                                                              >  2:280115/1‑149                                                                                                  CACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCC                                                             >  8:110684/1‑149                                                                                                    CAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGT                                                           <  4:227016/149‑1                                                                                                                AAGTTTCAAAAACGGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGT                                               >  2:90299/1‑149                                                                                                                AAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGTG                                              >  3:142945/1‑149                                                                                                                AAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCC                                                             >  3:245354/1‑135                                                                                                                AAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCC                                                             <  4:245354/135‑1                                                                                                                AAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCAGAGAACGAGGGCGAAGCCCACGCCTTGGGGGATTAGCGAGAAGCCAAAAGGGCCTTGACACGAACGACGGCAGCACGCACCTGCGACGGCGCCGTACCA‑CCAATGTG                                              >  7:272115/1‑149                                                                                                                                         tcgttcGCGGGCACGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGTGGTCACGCGCATTCACCGAGCCTTC                      >  2:140152/7‑149                                                                                                                                         tcgttcGCGGGCACGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGTGGTCACGCGCATTCACCGAGCCTTC                      >  5:8651/7‑149                                                                                                                                                      TGCCCGCGAACGAGGGCGAAGCCCGCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACG         <  4:205766/149‑1                                                                                                                                                       GCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGG        >  3:169666/1‑149                                                                                                                                                         CCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGC       >  8:247013/1‑148                                                                                                                                                             GAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCCGCACGCACCTGCGCCGGCGCCGTACCACCCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAAAC   <  1:280115/149‑1                                                                                                                                                             GAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAAACA  >  8:252983/1‑149                                                                                                                                                                                                                                                                                                                    AGGTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/235477‑235320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaCGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCA‑CCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAAACA  >  NC_002947/235401‑235546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.