New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 358693	60 (1.000)	3 (0.050)	3/248	NT	5.0%	coding (160/1107 nt)	gbdR	AraC family transcriptional regulator
	?	NC_002947	= 358725	58 (1.030)					coding (192/1107 nt)	gbdR	AraC family transcriptional regulator

CGTCGTACACCTCCGGGAATCCAACCCAGAACCGCACAACACCCCAGTCCATCGGGTTTCTTCTATTGGACAATTTCACCCTGATTTCCCTGGCATCGGCGGTCGAGCCGCTGCGCATGGCCAACCAGCTGTCTGGCCGTGAGCTGTATCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/358538‑358693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgctggcCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAATAGAAGAAACCCGATGGACTGGGGT  <  NC_002947/358725‑358578                                                                                                                                                                                                                                                                                                                  CGTCGTACACCTCCGGGAATCCAACCCAGAACCGCACAACACCCCAGTCCATCGGGTTTCTTCTATTGGACAATTTCACCCTGATTTCCCTGGCATCGGCGGTCGAGCCGCTGCGCATGGCCAACCAGCTGTCTGGCCGTGAGCTGTAT                                                                                                                                                             <  6:195677/149‑1  GTCGTACACCTCCGGGAATCCAACCCAGAACCGCACAACACCCCAGTCCATCGGGTTTCTTCTATTGGACAATTTCACCCTGATTTCCCTGGCATCGGCGGTCGAGCCGCTGCGCATGGCCAACCAGCTGTCTGGCCGTGAGCTGTATC                                                                                                                                                            >  2:59813/1‑149  GTCGTACACCTCCGGGAATCCAACCCAGAACCGCACAACACCCCAGTCCATCGGGTTTCTTCTATTGGACAATTTCACCCTGATTTCCCTGGCATCGGCGGTCGAGCCGCTGCGCATGGCCAACCAGCTGTCTGGCCGTGAGCTGTATC                                                                                                                                                            <  4:262257/149‑1        CACCTCCGGGAATCCAACCCAGAACCTCACAACACCCCAGTCCATCGGGTTTCTTCTATTGGACAATTTCACCCTGATTTCCCTGGCATCGGCGGTCGAGCCGCTGCGCATGGCCAACCAGCTGTCTGGCCGTGAGCTGTATCGCTGG                                                                                                                                                       <  7:125483/148‑1                                          CCCCAGTCCATCGGGTTTCTTCTATTGGACAATTTCACCCTGATTTCCCTGGCATCGGCGGTCGAGCCGCTGCGCATGGCCAACCAGCTGTCTGGCCGTGAGCTGTATCGCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGC                                                                                                                    <  8:7587/149‑1                                             CAGTCCATCGGGTTTCTTCTATTGGACAATTTCACCCTGATTTCCCTGGCATCGGCGGTCGAGCCTCTGCGCATGGCCAACCAGCTGTCTGGCCGTGAGCTGTATCGCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAG                                                                                                                 <  2:111220/149‑1                                              AGTCCATCGGGTTTCTTCTATTGGAAAATTTCACCCTGATTTCCCTGGCATCGGCGGTCGAGCCGCTGCGCATGGCCAACCAGCTGTCTGGCCGTGAGCTGTATCGCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGC                                                                                                                <  5:26621/149‑1                                                                                                                                                   gATCGCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAATAGAAGAAACCCGATG           <  4:289249/148‑1                                                                                                                                                    ATCGCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAATAGAAGAAACCCGATGG          >  3:90117/1‑149                                                                                                                                                    ATCGCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAATAGAAGAAACCCGATG           >  2:369203/1‑148                                                                                                                                                    ATCGCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAAT                          <  2:373451/133‑1                                                                                                                                                    ATCGCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAAT                          >  1:373451/1‑133                                                                                                                                                       GCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTC                              <  4:149136/126‑1                                                                                                                                                       GCTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTC                              >  3:149136/1‑126                                                                                                                                                        CTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAATAGAAGAAA                  >  1:337526/1‑137                                                                                                                                                        CTGGCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAATAGAAGAAA                  <  2:337526/137‑1                                                                                                                                                           GCCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAATAGAAGAAACCCGATGGACTG      <  8:312513/146‑1                                                                                                                                                            CCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAATAGAAGAAACCCGATGGACTGGGGT  >  1:86116/1‑149                                                                                                                                                                                                                                                                                                                  CGTCGTACACCTCCGGGAATCCAACCCAGAACCGCACAACACCCCAGTCCATCGGGTTTCTTCTATTGGACAATTTCACCCTGATTTCCCTGGCATCGGCGGTCGAGCCGCTGCGCATGGCCAACCAGCTGTCTGGCCGTGAGCTGTATCGCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/358538‑358693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgctggcCCACACCTGGCCGCCATCGATCGTCAGCGTGTGCCAGCGATACAGCTCACGGCCAGACAGCTGGTTGGCCATGCGCAGCGGCTCGACCGCCGATGCCAGGGAAATCAGGGTGAAATTGTCCAATAGAAGAAACCCGATGGACTGGGGT  <  NC_002947/358725‑358578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.