New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 544902	40 (0.660)	3 (0.050)	3/254	NT	6.8%	coding (3142/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'
	?	NC_002947	= 544923	44 (0.770)					coding (3163/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'

TGCCTTACGGTGCGGTGATTTCGGTCAAGGAAGGTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/544750‑544902 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagcCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTTTCACCTTCCT  <  NC_002947/544923‑544777                                                                                                                                                                                                                                                                                                              TGCCTTACGGTGCGGTGATTTCGGTCAAGGAAGGTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCAT                                                                                                                                                          >  1:15591/1‑148   CCTTACGGTGCGGTGATTTCGGTCAAGGAAGGTGAGAAGGTCGAAGCTGGCGCCATAGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGCAAACATCACCATC                                                                                                                                                         >  6:346956/1‑147                                       AAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGAT                                                                                                                   <  8:293574/149‑1                                                   GGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTT                                                                                                                <  3:6362/140‑1                                                   GGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTT                                                                                                                >  4:6362/1‑140                                                                                                                                                    TCAAGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTTTCACCT      >  1:123937/1‑149                                                                                                                                                      AAGCCGGTCAGTTCGTCGGTCTGCCGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTTTCACCTTC    >  4:346632/1‑149                                                                                                                                                      AAGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGCCCTTTTCACCTTC    >  8:248177/1‑149                                                                                                                                                      AAGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTTTCACCTTC    <  3:247931/149‑1                                                                                                                                                      AAGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTTTCACCTTC    >  4:174370/1‑149                                                                                                                                                      AAGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTT            >  5:246925/1‑141                                                                                                                                                      AAGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTT            <  6:246925/141‑1                                                                                                                                                       AGCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTTTCACCTTCC   <  1:5804/149‑1                                                                                                                                                        GCCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTTTCACCTTCCT  >  3:68895/1‑149                                                                                                                                                                                                                                                                                                              TGCCTTACGGTGCGGTGATTTCGGTCAAGGAAGGTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/544750‑544902 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagcCGGTCAGTTCGTCGGTCTGACGCTTGATGGTGATGTTTTCTTCCATGCCCACGAAGGTCACGGTACCTTTCAGCTCGGTAACGATCGGGTGGGTGTGTGGGTCCCACTTGGCGACGATGGCGCCAGCTTCGACCTTTTCACCTTCCT  <  NC_002947/544923‑544777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.