New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 544902	40 (0.660)	3 (0.050)	3/254	NT	6.8%	coding (3142/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'
	?	NC_002947	= 544923	44 (0.770)					coding (3163/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'

AGGAAGGTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAGGTACTGACGTACCTGCCCAGTACTTCCTGC  >  NC_002947/544777‑545064                                                                                                                                                   |                                                                                                                                              aggaaggTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGgc                                                                                                                                             >  3:68895‑M2/1‑147 (MQ=255)  ggaaggTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGgct                                                                                                                                            <  1:5804‑M2/149‑4 (MQ=255)   gaaggTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGgctt                                                                                                                                           >  4:174370‑M2/1‑145 (MQ=255)   gaaggTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGgctt                                                                                                                                           <  3:247931‑M2/149‑5 (MQ=255)   gaaggTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGGCAGACCGACGAACTGACCGgctt                                                                                                                                           >  4:346632‑M2/1‑145 (MQ=255)   gaaggTGAAAAGGGCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGgctt                                                                                                                                           >  8:248177‑M2/1‑145 (MQ=255)     aggTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGgcttga                                                                                                                                         >  1:123937‑M2/1‑143 (MQ=255)           aaaGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGgctt                                                                                                                                           >  5:246925‑M2/1‑137 (MQ=255)           aaaGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGgctt                                                                                                                                           <  6:246925‑M2/141‑5 (MQ=255)           aaaGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACa                                                                                                                                   >  1:169494/1‑149 (MQ=255)               gTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTg                                                                                                                                >  4:353059/1‑148 (MQ=255)                    aGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTAc                                                                                                                          <  4:171649/149‑1 (MQ=255)                         gcgcCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGATCTGAAAGGTACCGTGACCTTCGTTGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGa                                                                                                                      <  7:197057/148‑1 (MQ=255)                            ccATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGt                                                                                                                   >  5:148819/1‑148 (MQ=255)                             cATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCa                                                                                                                 <  6:309083/149‑1 (MQ=255)                              aTCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGACCAGACCGGCTTGCCCAACATTGAAGTACTGGACGTCaa                                                                                                                >  8:135932/1‑149 (MQ=255)                              aTCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCaa                                                                                                                <  3:310485/149‑1 (MQ=255)                               tcgtcgCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAg                                                                                                               >  5:7068/1‑149 (MQ=255)                                  tcgCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGAt                                                                                                            >  5:185006/1‑149 (MQ=255)                                     ccAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGc                                                                                                         >  5:99786/1‑149 (MQ=255)                                      cAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGcc                                                                                                        <  6:185006/149‑1 (MQ=255)                                          tGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGc                                                                                                    <  8:34559/149‑1 (MQ=255)                                             gACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGc                                                                                                 <  3:184325/149‑1 (MQ=255)                                                ccACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAgg                                                                                              <  4:247931/149‑1 (MQ=255)                                                      acccacccGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACAGACGCACTGACCGGCTTGACCAACATTGAAGTAAAGGACGTCAAGGATCGCCCTCCCGCGGGCAAgg                                                                                         >  4:221319/1‑148 (MQ=255)                                                          acccGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAAtc                                                                                    >  4:257686/1‑149 (MQ=255)                                                                  gTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCgg                                                                             <  6:148819/148‑1 (MQ=255)                                                                  gTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCgg                                                                             <  2:169494/148‑1 (MQ=255)                                                                        gAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCaa                                                                      <  3:353059/149‑1 (MQ=255)                                                                        gAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCaa                                                                      <  2:15591/149‑1 (MQ=255)                                                                           cTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGAt                                                                   <  2:5804/149‑1 (MQ=255)                                                                            tGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATg                                                                  >  5:148620/1‑149 (MQ=255)                                                                             gAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATgg                                                                 >  4:181359/1‑149 (MQ=255)                                                                              aaaGGTACCGTGACCTTCGTGGGCATGGATGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCACTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGt                                                                >  7:172076/1‑149 (MQ=255)                                                                                aGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGGCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCg                                                              <  5:175961/149‑1 (MQ=255)                                                                                        tGACCTTCGTGGGCATGGAAGAAAACATCACCATCAATCGTCAGACCGACGAACTGACCGGCTTGACCAACAATGAAGTACTGGACGTCAAGGATCGCCCTGCCGCACGCAAGTAAATCCGTCCGGCAATCAAGATGGTCGAtcctg                                                        >  7:195368/1‑147 (MQ=255)                                                                                                   ggCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATc                                            <  3:257686/148‑1 (MQ=255)                                                                                                     cATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTg                                          >  6:88981/1‑148 (MQ=255)                                                                                                     cATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGt                                         <  6:99786/149‑1 (MQ=255)                                                                                                       tGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTAc                                       >  1:66849/1‑149 (MQ=255)                                                                                                       tGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTAc                                       >  5:270660/1‑149 (MQ=255)                                                                                                          aagaaAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTg                                    >  7:190141/1‑149 (MQ=255)                                                                                                             aaaaCATCACCATCAAGCGTCAGACCGAAGAACTGAACGGCTGGACCAACATTTAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCa                                 <  5:346956/149‑1 (MQ=255)                                                                                                              aaaCATCACCATGAAGCGTCAGACCGACGAACTGTCCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCGGCAGGCAAGGAAATGCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAg                                <  8:195368/149‑1 (MQ=255)                                                                                                               aaCATCACCATCAAGCGTCAGACCGACGAACTGACCGgcttgatggtgatgttttcttccatgcccacgaaggtcacggtacctttcagctcggtaacgatcgggtgggtgtgtgggtcccacttggcgacgatggcgcc                                        <  3:6362‑M2/140‑104 (MQ=255)                                                                                                               aaCATCACCATCAAGCGTCAGACCGACGAACTGACCGgcttgatggtgatgttttcttccatgcccacgaaggtcacggtacctttcagctcggtaacgatcgggtgggtgtgtgggtcccacttggcgacgatggcgcc                                        >  4:6362‑M2/1‑37 (MQ=255)                                                                                                                  aTCACCATCAAGCGTCAGACCGACGAACTGACCGgcttgatggtgatgttttcttccatgcccacgaaggtcacggtacctttcagctcggtaacgatcgggtgggtgtgtgggtcccacttggcgacgatggcgccagcttcgacctt                            <  8:293574‑M2/149‑116 (MQ=255)                                                                                                                             gCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAGGTACTGACGTACCTg                 >  5:73204/1‑149 (MQ=255)                                                                                                                                  aGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAGGTACTGACGTACCTGCCCa             <  7:135932/148‑1 (MQ=255)                                                                                                                                     ccGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAGGTACTGACGTACCTGCCCAGTAc         <  6:7068/149‑1 (MQ=255)                                                                                                                                       gtcgaACTGACCGGCTTGACGAAAATTGATGTACTGGACTTCTAGGATCGCGCTGCGGCAGGCAAGTAAATCCGTCCGGCAATGAAGATGGTCGATGCTGCAGGCaa                                                 <  6:1073/105‑1 (MQ=255)                                                                                                                                       gacgaACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAGGTACTGACGTACCTGCCCAGTACtt       >  8:107742/1‑149 (MQ=255)                                                                                                                                       gacgaACTGACCGGCTAGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCaa                                                 >  5:1073/1‑107 (MQ=255)                                                                                                                                           aaCTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGt                                         <  4:261290/111‑1 (MQ=255)                                                                                                                                           aaCTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGt                                         >  3:261290/1‑111 (MQ=255)                                                                                                                                            aCTGACCGGCTTGACCAACATTGAAGTCCTGGACGTCCAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAGGTACTGACGTACCTGCCCAGTACTTCCTGc  <  4:307563/149‑1 (MQ=255)                                                                                                                                                aCCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAGGTACTGACGTACCTGccc              <  4:101286/133‑1 (MQ=255)                                                                                                                                                aCCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAGGTACTGACGTACCTGccc              >  3:101286/1‑133 (MQ=255)                                                                                                                                                   |                                                                                                                                              AGGAAGGTGAAAAGGTCGAAGCTGGCGCCATCGTCGCCAAGTGGGACCCACACACCCACCCGATCGTTACCGAGCTGAAAGGTACCGTGACCTTCGTGGGCATGGAAGAAAACATCACCATCAAGCGTCAGACCGACGAACTGACCGGCTTGACCAACATTGAAGTACTGGACGTCAAGGATCGCCCTGCCGCAGGCAAGGAAATCCGTCCGGCAATCAAGATGGTCGATGCTGCAGGCAAGGATCTGTACCTGCCAGGTACTGACGTACCTGCCCAGTACTTCCTGC  >  NC_002947/544777‑545064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.