New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	563097 =	78 (1.300)	6 (0.100)	5/256	NT	7.4%	coding (180/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha
	?	NC_002947	563131 =	76 (1.310)					coding (214/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha

TAACCACCCCCGAACCCTTTTTCGACAAGGTCAGCGTAACTTCGTCACGACCATGCAGTTTGATAGCGAGACCTTTCAGGTTCAACAGGATTTCAATTACGTCTTCCTGAACACCTTCGATCGCGGAGTACTCATGGAGTACGCCATCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/563248‑563097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCGGGGGTGGTTACCGCTGCC  >  NC_002947/563131‑563256                                                                                                                                                                                                                                                                                        TAACCACCCCCGAACCCTTTTTCGACAAGGTCAGCGTAACTTCGTCACGACCATGCAGTTTGATAGCGAGACCTTTCAGGTTCAACAGGATTTCAATTACGTCTTCCTGAACACCTTCGATCGCGGAGTACTCATGGAGTACGCCATC                                                                                                                                    >  1:226693/1‑148  AACCACCCCCGAACCCTTTTTCGACAAGGTCAGCGTAACTTCGTCACGACCATGCAGTTTGATAGCGAGACCTTTCAGGTTCAACAGGATTTCAATTACGTCTTCCTGAACACCTTCGATCGCGGAGTACTCATGGAGTACGCCATCGA                                                                                                                                  >  7:265104/1‑149                                                                                                                  CCTTCGATCGCGGAGTACTCATGGAGTACGCCATCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCGGG                  >  8:338254/1‑149                                                                                                                   CTTCGATCGCGGAGTACTCATGGAGTACGCCATCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCGGGG                 >  5:245067/1‑149                                                                                                                   CTTCGATCGCGGAGTACTCATGGAGTACGCCATCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGAC                                                     <  5:160783/113‑1                                                                                                                   CTTCGATCGCGGAGTACTCATGGAGTACGCCATCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGAC                                                     >  6:160783/1‑113                                                                                                                     TCGATCGCGGAGTACTCATGGAGTACGCCATCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCGGGGGT               >  3:221726/1‑149                                                                                                                                   CTCATGGAGTACGCCATCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCGGGGGTGGTTACCGCTGCC  <  6:245067/148‑1                                                                                                                                                                                                                                                                                        TAACCACCCCCGAACCCTTTTTCGACAAGGTCAGCGTAACTTCGTCACGACCATGCAGTTTGATAGCGAGACCTTTCAGGTTCAACAGGATTTCAATTACGTCTTCCTGAACACCTTCGATCGCGGAGTACTCATGGAGTACGCCATCGATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/563248‑563097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCGGGGGTGGTTACCGCTGCC  >  NC_002947/563131‑563256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.