New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1204282	57 (0.950)	3 (0.050)	3/256	NT	5.0%	coding (625/645 nt)	gspN	type II secretion pathway protein GspN
	?	NC_002947	= 1204318	59 (1.020)					intergenic (+16/+144)	gspN/PP_1056	type II secretion pathway protein GspN/iron‑chelator utilization protein

GCAGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1204131‑1204282 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCCG  <  NC_002947/1204318‑1204277                                                                                                                                                                                                    GCAGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCATTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGG                                               <  7:131513/149‑1 GCAGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGG                                               <  3:4541/149‑1 GCAGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGG                                               <  5:113500/149‑1   AGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGG                                             <  6:200170/149‑1                                             ACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGCCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCC   <  8:310056/149‑1                                                                                         GAAGCGCAGTTGACTCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGCCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCCG  <  4:238333/106‑1                                                                                         GAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGCCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCCG  >  3:238333/1‑106                                                                                                                                                                                                    GCAGTTGGCGCAGCAAGGGCAACATCAACTGACCGTGGATGCCGACCTGCCAGGACGCCAGGTGCAGGTGGTGTTCCAGCTGCAGCCTGAAGCGCAGTTGACGCCATTGTTGCGTGGGGCTCAATGGCTTGGACCGCAGGCCCTGGCGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1204131‑1204282 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggcCGCGCCACGTTGTTGCTTACCAACGAAGGTCTCGCTGCCCCG  <  NC_002947/1204318‑1204277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.