| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499507 = | 25 (0.420) | 7 (0.120) +GCG |
6/260 | NT | 18.8% | intergenic (+84/‑80) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 5594166 | 37 (0.620) | intergenic (‑113/+32) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase | |||||
CCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1499647‑1499507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG < NC_002947/5594166‑5594113 ||| CCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGC > 3:313293/1‑143CCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGC < 4:313293/143‑1CCGCGTCATGGAAGAAGGCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTCAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCC < 1:275242/149‑1 TGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcac > 2:126185/1‑146 GGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcacc > 1:357101/1‑145 GAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGT > 7:79576/1‑135 GAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGT < 8:79576/135‑1 AAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcaccg < 2:357101/148‑6 TTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAA‑CAGGCGCCGCGGTGCATGG > 7:120605/1‑148 GCTTTATAGCGTTCTTAGGGATTCATTATTCGTTAGCGAGTCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAA‑CAGGCGCCGCGGTGCATGGCACCGGCTTT < 8:120605/148‑1 CTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTG > 8:134574/1‑149 AGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG < 7:134574/147‑1 ||| CCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGT‑AGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1499647‑1499507‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG < NC_002947/5594166‑5594113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |