| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499507 = | 25 (0.420) | 7 (0.120) +GCG |
6/260 | NT | 18.8% | intergenic (+84/‑80) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 5594166 | 37 (0.620) | intergenic (‑113/+32) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase | |||||
CCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCACG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGA > NC_002947/1499369‑1499654 | ccGTGATCCGGCAATTATGCGCCGGAACGACGCCTTGGCACCACTGCAGTCCGGAGGGTGCCAAACGGTGGGAGCGGGCGTGCCCGCTAACCTGGCGCCGGGGTGCTTGGCACGGGCTTTGCGGGTGTTGGCGGGCACGCCCGCTCCca < 8:276818/149‑1 (MQ=12) ccTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCg > 6:363303/1‑149 (MQ=21) cTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCgg < 7:99546/149‑1 (MQ=21) aaCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCggg < 2:231411/147‑1 (MQ=21) aGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCCCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCCCGCCCGCTCCCACAGCCTGATTGCCATTAAGCGGGCCTaact > 6:378172/1‑146 (MQ=21) aCTGAGGCTGCCAAACGGGGGGAGCGGGCGTGCCCGCGAACCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGtttt < 4:65137/149‑1 (MQ=21) tGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGa < 7:20183/136‑1 (MQ=21) ggCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTttgtt < 6:369453/149‑1 (MQ=21) ggCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTttgtt < 5:363303/149‑1 (MQ=21) gCTGCGAAACGGTGGGAGCGGGCTTGGCCGCTAAACAGGCGCCGCGGTTCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTATttgtt < 5:279559/148‑1 (MQ=21) tgcggggggGTGCCCGCTAAACCGGCGCCGGGGTGCAGGGCCCCGGCTTTGCGGGGGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAAt < 3:227688/144‑1 (MQ=37) gCGGGCGTGCCGCCTAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 4:39571/149‑1 (MQ=25) gggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATAGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa > 6:165583/1‑149 (MQ=25) gCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACt > 7:264721/1‑149 (MQ=37) ccgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 7:134574‑M1/90‑1 (MQ=255) ccGCGAAACCGCCGCCGCGGTGCATGGCACGGGCTTTGCGGGTGTTCGCGGGCAGGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 1:151225/149‑1 (MQ=255) cgcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 7:217623/1‑146 (MQ=37) gcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc < 1:305492/135‑1 (MQ=25) gcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc > 2:305492/1‑135 (MQ=25) gcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAg > 4:327664/1‑148 (MQ=37) aaaCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACg < 8:217623/149‑1 (MQ=37) aGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAt < 3:331502/149‑1 (MQ=37) gccgcGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg > 4:120850/1‑149 (MQ=37) caaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg > 8:134574‑M1/45‑149 (MQ=255) aaagccggtgccatgcaccgcggcgcctgttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGACTCGCTAACGAATAATGAATCCCTAAGAACGCTATAAAGc < 8:120605‑M1/106‑1 (MQ=255) cgGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCt < 6:271258/108‑1 (MQ=21) cgGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCt > 5:271258/1‑108 (MQ=21) ggTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAt < 3:120850/149‑1 (MQ=38) ccatgcaccgcggcgcctgttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaaa > 7:120605‑M1/33‑148 (MQ=255) cggtgttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGActtctt < 2:357101‑M1/130‑1 (MQ=255) ggtgttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTcc > 1:357101‑M1/18‑149 (MQ=255) gtgttcgcgggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCa > 2:126185‑M1/17‑149 (MQ=255) ggcacgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTGACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGCCTTCTTCCATGACgcgg < 1:275242‑M1/142‑1 (MQ=255) acgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACttcttc < 8:79576‑M1/131‑1 (MQ=255) acgcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACttcttc > 7:79576‑M1/5‑135 (MQ=255) gcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACgcgg < 4:313293‑M1/141‑1 (MQ=255) gcCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACgcgg > 3:313293‑M1/3‑143 (MQ=255) ccgcTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGa > 1:130782/1‑148 (MQ=255) ccgcTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGa > 8:93966/1‑148 (MQ=255) | CCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑TCGGGCACG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCT‑ACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGA > NC_002947/1499369‑1499654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |