New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1572718 = | 51 (0.850) | 5 (0.090) | 5/258 | NT | 9.9% | coding (840/1353 nt) | pcaB | 3‑carboxy‑cis,cis‑muconate cycloisomerase |
? | NC_002947 | 1572750 = | 42 (0.720) | coding (872/1353 nt) | pcaB | 3‑carboxy‑cis,cis‑muconate cycloisomerase |
CGATCAACACGGCGGCACCCACCGGGTTGCGCTTGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1572755‑1572718 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTGCGCC > NC_002947/1572750‑1572896 CGATCAACACGGCGGCACCCACCGGGTTGCGCTTGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGC > 3:142419/1‑149 GATCAACACGGCGGCACCCACCGGGTTGCGCTTGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCAT < 5:184217/129‑1 GATCAACACGGCGGCACCCACCGGGTTGCGCTTGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCAT > 6:184217/1‑129 TCAACACGGCGGCACCCACCGGGTTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCA < 3:225239/110‑1 TCAACACGGCGGCACCCACCGGGTTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCA > 4:225239/1‑110 TTGATCGGTGCCGGGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTGCGCC < 4:69870/148‑1 TTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTGCGC > 4:266373/1‑147 TTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCAGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTGCGC > 4:288328/1‑147 CGATCAACACGGCGGCACCCACCGGGTTGCGCTTGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1572755‑1572718 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTGCGCC > NC_002947/1572750‑1572896 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |