New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1572718 =	51 (0.850)	5 (0.090)	5/258	NT	9.9%	coding (840/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase
	?	NC_002947	1572750 =	42 (0.720)					coding (872/1353 nt)	pcaB	3‑carboxy‑cis,cis‑muconate cycloisomerase

GTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTGCGCC  >  NC_002947/1572605‑1572896                                                                                                                                                  |                                                                                                                                                   gTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGAt                                                                                                                                                 <  4:9449/149‑1 (MQ=255)   gcagggtttcccactcggcatgccataggcccaggctgcgttcgtgctcctgaggcatggctgcgaacagcgtcgacagcaggcccggcacgcgggtcgcggcaccgatcaACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCg                                                                                                                                               >  3:142419‑M1/112‑149 (MQ=255)             cTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGAc                                                                                                                                     <  6:20577/149‑1 (MQ=255)              tGGGCAAGTTCGGCCGTGATATCAGCTAGCTGATGCAAACCGATGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGAGTTGATCGGTGCAGCGAcc                                                                                                                                    >  7:267212/1‑149 (MQ=255)                  cAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCcgcg                                                                                                                                >  3:110812/1‑149 (MQ=255)                      atgccataggcccaggctgcgttcgtgctcctgaggcatggctgcgaacagcgtcgacagcaggcccggcacgcgggtcgcggcaccgatcaACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATc                                                                                                                                                <  5:184217‑M1/37‑1 (MQ=255)                      atgccataggcccaggctgcgttcgtgctcctgaggcatggctgcgaacagcgtcgacagcaggcccggcacgcgggtcgcggcaccgatcaACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATc                                                                                                                                                >  6:184217‑M1/93‑129 (MQ=255)                            cGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCct                                                                                                                      >  5:125832/1‑149 (MQ=255)                             gTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTTCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCctg                                                                                                                     <  7:158483/149‑1 (MQ=255)                                atatCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCctgctg                                                                                                                  >  3:67994/1‑149 (MQ=255)                                   tCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTc                                                                                                                >  7:9597/1‑148 (MQ=255)                                       tgcgttcgtgctcctgaggcatggctgcgaacagcgtcgacagcaggcccggcacgcgggtcgcggcaccgatcaACACGGCGGCAACCCGGTGGGTGCCGCCGTGTTGa                                                                                                                                                  <  3:225239‑M1/35‑1 (MQ=255)                                       tgcgttcgtgctcctgaggcatggctgcgaacagcgtcgacagcaggcccggcacgcgggtcgcggcaccgatcaACACGGCGGCAACCCGGTGGGTGCCGCCGTGTTGa                                                                                                                                                  >  4:225239‑M1/76‑110 (MQ=255)                                          gCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTg                                                                                                         <  4:37537/148‑1 (MQ=255)                                          gCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTg                                                                                                         <  1:73789/148‑1 (MQ=255)                                              aTGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCg                                                                                                     >  6:339749/1‑148 (MQ=255)                                              aTGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCg                                                                                                     >  6:334077/1‑148 (MQ=255)                                                 cAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAg                                                                                                  <  7:318617/148‑1 (MQ=255)                                                 cAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGc                                                                                                 >  1:19074/1‑149 (MQ=255)                                                  aaaCCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGAGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGc                                                                                                 >  4:260783/1‑148 (MQ=255)                                                    aCCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCAt                                                                                              >  3:248056/1‑149 (MQ=255)                                                      cGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGc                                                                                            >  8:138941/1‑149 (MQ=255)                                                        aGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTTGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCt                                                                                          <  2:213630/149‑1 (MQ=255)                                                         ggCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTc                                                                                         <  3:200920/149‑1 (MQ=255)                                                                gAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCa                                                                                  >  2:178977/1‑149 (MQ=255)                                                                gAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCa                                                                                  <  1:9416/149‑1 (MQ=255)                                                                   gtgtTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGc                                                                                                                        >  2:309702/1‑108 (MQ=255)                                                                   gtgtTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGc                                                                                                                        <  1:309702/108‑1 (MQ=255)                                                                     gtTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGGCTCAGGAGCACGaag                                                                             >  8:326620/1‑148 (MQ=255)                                                                      tttGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACg                                                                            >  8:301217/1‑149 (MQ=255)                                                                       ttGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGCCCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGAGTTGATCGGTGCCGAGACCCGCGTGCCGGGCCTGCTGTCGACGATTGTCGCAGCCAGGCCTCAGGAGCACGAACg                                                                            >  6:311863/1‑148 (MQ=255)                                                                          aGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGc                                                                        <  4:67994/149‑1 (MQ=255)                                                                            ccTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCt                                                                      <  1:178977/149‑1 (MQ=255)                                                                                       gggCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATgg                                                            >  4:25474/1‑148 (MQ=255)                                                                                            aGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGcc                                                      <  5:189050/149‑1 (MQ=255)                                                                                              ggtggtTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGa                                                    <  4:248056/149‑1 (MQ=255)                                                                                                  gtTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTg                                                 <  3:25474/148‑1 (MQ=255)                                                                                                      ttcGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCAGAGTGGGaaa                                            >  8:205110/1‑149 (MQ=255)                                                                                                       tcGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAAc                                           >  1:182282/1‑149 (MQ=255)                                                                                                        cGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGaaa                                            <  2:19074/147‑1 (MQ=255)                                                                                                          aCCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCt                                        >  1:317074/1‑149 (MQ=255)                                                                                                            cgatcaacacggcggcacccaccgggttgcgcttgtgtTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGc                                      >  3:142419‑M2/39‑149 (MQ=255)                                                                                                             gatcaacacggcggcacccaccgggttgcgcttgtgtTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCAt                                                         >  6:184217‑M2/38‑129 (MQ=255)                                                                                                             gatcaacacggcggcacccaccgggttgcgcttgtgtTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCAt                                                         <  5:184217‑M2/92‑1 (MQ=255)                                                                                                              tGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCg                                    >  6:189399/1‑149 (MQ=255)                                                                                                               tcaacacggcggcacccaccgggttgccgccgtgtTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCa                                                                          >  4:225239‑M2/36‑110 (MQ=255)                                                                                                               tcaacacggcggcacccaccgggttgccgccgtgtTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCa                                                                          <  3:225239‑M2/75‑1 (MQ=255)                                                                                                                      aaGCGCAACCCGGTGGGTGCCGCCGTGTTGAGCGGTGCCGCGACCCGCGTGCCGGGCCGGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGTGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATctg                            <  7:235920/149‑1 (MQ=255)                                                                                                                       aGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGATTGGGAAACCCTGCCGGATATctgc                           >  3:69870/1‑149 (MQ=255)                                                                                                                        gcgcAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATctgct                          >  4:211095/1‑149 (MQ=255)                                                                                                                        gcgcAACCCGGTGGGTGCCGCCGTGTTGATCGCTGACGCGACCCGTGTCCCGAGCATGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATctgct                          >  2:195778/1‑149 (MQ=255)                                                                                                                             aCCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTg                     <  4:110812/149‑1 (MQ=255)                                                                                                                                   tgggtgCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTctct               <  7:301217/149‑1 (MQ=255)                                                                                                                                                 tTGATCGGTGCCGGGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTGCGcc  <  4:69870‑M2/147‑1 (MQ=255)                                                                                                                                                 tTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTgcgc   >  4:266373‑M2/2‑147 (MQ=255)                                                                                                                                                 tTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCAGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTgcgc   >  4:288328‑M2/2‑147 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GTTGCCGGCAGCCTGGGCAAGTTCGGCCGTGATATCAGCTTGCTGATGCAAACCGAGGCGGGGGAGGTGTTTGAGCCTTCTGCGCCGGGCAAGGGTGGTTCTTCGACCATGCCACACAAGCGCAACCCGGTGGGTGCCGCCGTGTTGATCGGTGCCGCGACCCGCGTGCCGGGCCTGCTGTCGACGCTGTTCGCAGCCATGCCTCAGGAGCACGAACGCAGCCTGGGCCTATGGCATGCCGAGTGGGAAACCCTGCCGGATATCTGCTGCCTGGTCTCTGGCGCCCTGCGCC  >  NC_002947/1572605‑1572896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.