New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1612138	55 (0.910)	3 (0.050)	3/254	NT	6.2%	intergenic (‑61/‑66)	PP_1412/ung	3‑hydroxyisobutyryl‑CoA hydrolase/uracil‑DNA glycosylase
	?	NC_002947	= 1612209	39 (0.680)					coding (6/693 nt)	ung	uracil‑DNA glycosylase

GTTCAGGGCATTGAGCGCCTTGGGCGCATCCAGGGTGGCGATGCCGATGCGGGCGCCATCGACGCCGGTGAGTACCTCGCAGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGGCCGATCATGCCGGTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1611985‑1612138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgtcAGTCATGGGGCCTTCCATAAACAATGGCGCGACACTAGGTAAGCCCTTCGCGCTTGTCAAACGATCCGACCGACGACCGGCATGATCGG‑CCAGGCAAGCCATACTTGAGCGATGACTTGCGAGAGGTAGTCCATGACCATTCACTGC  <  NC_002947/1612209‑1612063                                                                                                                                                                                                                                                                                                                GTTCAGGGCATTGAGCGCCTTGGGCGCATCCAGGGTGGCGATGCCGATGCGGGCGCCATCGACGCCGGTGAGTACCTCGCAGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGGCCGATCATGCCGG                                                                                                                                                           >  7:268210/1‑149    CAGGGCATTGAGCGCCTTGGGCGCATCCAGGGTGGCGATGCCGATGCGGGCGCCATCGACGCCGGTGAGTACCTCGCAGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGGCCGATCATGCCGGTCG                                                                                                                                                        >  4:29949/1‑149                                                                                 AGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGGCCGATCATGCCGGTCGTCAGTCATGGGGCCTTCCATAAACAATGGCGCGACACTAGGTAAGCCCTTCGCGCTTGTCAAACGATCCGACCGAC                                                                            >  6:327961/1‑148                                                                                   TGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGGCCGATCATGCCGGTCGTCAGTCATGGGGCCTTCCATAAACAATGGCGCGACACTAGGTAAGCCCTTCGCGCTTGTCAAACGATCCGACCGACGAC                                                                         <  5:327961/149‑1                                                                                     AATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGGCCGATCATGCCGGTCGTCAGTCATGGGGCCTTCCATAAACAATGGCGCGACACTAGGTAAGCCCTTCGCGCTTGTCAAACGATCCGACCGACGACCG                                                                       <  6:76063/149‑1                                                                                                                                                        GTCATTCATGGGGCCTTCCATAAACAATGGCGCGACACTAGGTAAGCCCTTCGCGCTTGGCAAACGATCCGCCCGACGACCGGCATGATCGGTGCAGGCAAGCCATACTTGAGCGATGACTTGCGAGAGGTAGTCCATGACCATTCACT    <  1:289227/149‑1                                                                                                                                                         TCAGTCATGGGGCCTTCCATAAACAATGGCGCGACACTAGGTAAGCCCTTCGCGCTTGTCAAACGATCCGACCGACGACCGGCATGATCGG‑CCAGGCAAGCCATACTTGAGCGATGACTTGCGAGAGGTAGTCCATGACCATTCACTGC  >  3:160205/1‑149                                                                                                                                                                                                                                                                                                                GTTCAGGGCATTGAGCGCCTTGGGCGCATCCAGGGTGGCGATGCCGATGCGGGCGCCATCGACGCCGGTGAGTACCTCGCAGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGGCCGATCATGCCGGTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1611985‑1612138 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgtcAGTCATGGGGCCTTCCATAAACAATGGCGCGACACTAGGTAAGCCCTTCGCGCTTGTCAAACGATCCGACCGACGACCGGCATGATCGG‑CCAGGCAAGCCATACTTGAGCGATGACTTGCGAGAGGTAGTCCATGACCATTCACTGC  <  NC_002947/1612209‑1612063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.