New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1612138	55 (0.910)	3 (0.050)	3/254	NT	6.2%	intergenic (‑61/‑66)	PP_1412/ung	3‑hydroxyisobutyryl‑CoA hydrolase/uracil‑DNA glycosylase
	?	NC_002947	= 1612209	39 (0.680)					coding (6/693 nt)	ung	uracil‑DNA glycosylase

TCGCAGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGCGTGGCGAGTACGCTGCCGGCAAGGAGATCTACCCGCCAGGGCCGCT  >  NC_002947/1612061‑1612349                                                                                                                                                       |                                                                                                                                             tCGCAGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCAtgact                                                                                                                                              >  8:339019/1‑149 (MQ=255)   gCAGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTga                                                                                                                                            >  3:160205‑M2/1‑147 (MQ=255)     aGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGCACCGATCATGCCGGTCGTCGGGCGGATCGTTTGCCAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGAATgac                                                                                                                                           <  1:289227‑M2/149‑4 (MQ=255)         aaTGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGacgacg                                                                                                                                       <  3:109697/148‑1 (MQ=255)              tCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCa                                                                                                                                 >  3:277361/1‑149 (MQ=255)                aTGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCAt                                                                                                                                >  5:296769/1‑148 (MQ=255)                aTGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATc                                                                                                                               <  2:260278/149‑1 (MQ=255)                     cTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACt                                                                                                                          >  2:170990/1‑149 (MQ=255)                     cTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACt                                                                                                                          >  2:176652/1‑149 (MQ=255)                     cTACATCTCGCAAGTCATCGCTCAAGTATGGCTTGCCAGG‑CCGATCATGCAGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCAAGTGTCGCGCCATTGTTTAAGGAAGGCCCCATGACTGACGACGATCCCATCAAACt                                                                                                                          >  7:82604/1‑149 (MQ=255)                         ctctCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGaa                                                                                                                      <  8:1484/149‑1 (MQ=255)                            tcGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAAc                                                                                                                     <  6:373820/147‑1 (MQ=255)                            tcGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGAACGCATCAAACTCGAccc                                                                                                                    >  7:326991/1‑148 (MQ=255)                                  gTCATCGCTCAAGTATGGCTTGCCTGT‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTgg                                                                                                             <  8:268210/149‑1 (MQ=255)                                            aaGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGCGGGAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCa                                                                                                    >  1:293979/1‑149 (MQ=255)                                                aTGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCTTTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCAtt                                                                                                  >  1:118364/1‑146 (MQ=255)                                                aTGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCAtt                                                                                                  <  2:118364/146‑1 (MQ=255)                                                   gCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGcgcg                                                                                             <  8:295857/148‑1 (MQ=255)                                                    cTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGt                                                                                           >  6:85868/1‑149 (MQ=255)                                                        ccTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGAAAAGAGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGaa                                                                                        <  3:329419/148‑1 (MQ=255)                                                            g‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGa                                                                                   <  7:339019/149‑1 (MQ=255)                                                            g‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGa                                                                                   >  5:295158/1‑149 (MQ=255)                                                               cGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTgc                                                                                                <  2:282915/134‑1 (MQ=255)                                                               cGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCACCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTgc                                                                                                >  1:282915/1‑134 (MQ=255)                                                                gATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCCGCTGGAAGGCCGCATTGAGCGGTGAAGTCGAc                                                                                  >  2:218916/1‑147 (MQ=255)                                                                  tCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGc                                                                              <  1:218916/149‑1 (MQ=255)                                                                       ccGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTAc                                                                         <  2:293979/149‑1 (MQ=255)                                                                        cGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTgacgaccggcatgatcggccaggcaagccatacttgagcgatgacttgcgagaggtagtccatgaccatt                                                                        <  6:76063‑M2/149‑71 (MQ=255)                                                                         ggTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACAt                                                                       <  6:296769/149‑1 (MQ=255)                                                                          gtcgtcGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTgacgaccggcatgatcggccaggcaagccatacttgagcgatgacttgcgagaggtagtccatgaccattca                                                                      <  5:327961‑M2/149‑73 (MQ=255)                                                                             gtcggtcgGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTgacgaccggcatgatcggccaggcaagccatacttgagcgatgacttgcgagaggtagtccatgaccattcact                                                                    >  6:327961‑M2/1‑74 (MQ=255)                                                                                         gTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGa                                                        <  6:22689/148‑1 (MQ=255)                                                                                          tttGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGt                                                      <  1:327040/149‑1 (MQ=255)                                                                                             gACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTc                                                    <  1:59012/148‑1 (MQ=255)                                                                                              aCAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCt                                                  >  6:136870/1‑149 (MQ=255)                                                                                               cAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTg                                                 <  6:295158/149‑1 (MQ=255)                                                                                                                  caaGTGTCGCGCCATTGGTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCCTTGCGCGGTGAATTCGACCAGCCGTACATGCCCCAGCTGCGCGAGTTCCTGCGTGGCGAGTACGCTGcc                               >  2:368884/3‑149 (MQ=255)                                                                                                                    aGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGCGTGGCGAGTACGCTGCCgg                             >  2:361343/1‑149 (MQ=255)                                                                                                                          gcgcCATTGTTTATGGACGGTCCCATGACTGACGACGATGGCATCAAACTCCTACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCTAGTTCCTGCGTGGCGTGTACGCTGCCGGCAAgg                        <  8:82604/148‑1 (MQ=255)                                                                                                                            gcCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGCGTGGCGAGTACGCTGCCGGCAAGgaga                     <  5:194830/149‑1 (MQ=255)                                                                                                                                   tttATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGCGTGGCGAGTACGCTGCCGGCAAGGAGATCTAccc              >  4:15983/1‑149 (MQ=255)                                                                                                                                       tGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGAGTGGCGAGTACGCTGCCGGCAAGGAGATCTACCCGCCa          <  1:176652/149‑1 (MQ=255)                                                                                                                                        ggAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGAGTGGCGAGTACGCTGCCGGCAAGGAGATCTACCCGCCa          <  1:170990/148‑1 (MQ=255)                                                                                                                                         gAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGCGTGGCGAGTACGCTGCCGGCAAGGAGATCTACCCGCCAg         <  3:15983/148‑1 (MQ=255)                                                                                                                                            ggCCCCATGACTGACGACGATCGCATCATACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGCGTGGCGAGTACGCTGCCGGCAAGGAGATCTACCCGCCAGGGcc     >  1:23416/1‑149 (MQ=255)                                                                                                                                               cccATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGCGTGGCGAGTACGCTGCCGGCAAGGAGATCTACCCGCCAGGGCCGCt  >  8:313274/1‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                             TCGCAGTGAATGGTCATGGACTACCTCTCGCAAGTCATCGCTCAAGTATGGCTTGCCTGG‑CCGATCATGCCGGTCGTCGGTCGGATCGTTTGACAAGCGC‑GAAGGGCTTACCTAGTGTCGCGCCATTGTTTATGGAAGGCCCCATGACTGACGACGATCGCATCAAACTCGAACCCAGCTGGAAGGCCGCATTGCGCGGTGAATTCGACCAGCCTTACATGCACCAGCTGCGCGAGTTCCTGCGTGGCGAGTACGCTGCCGGCAAGGAGATCTACCCGCCAGGGCCGCT  >  NC_002947/1612061‑1612349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.