| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1936871 | 61 (1.010) | 3 (0.050) | 3/244 | NT | 5.6% | intergenic (+24/+66) | PP_1736/PP_1737 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 1936916 | 46 (0.830) | intergenic (+69/+21) | PP_1736/PP_1737 | hypothetical protein/hypothetical protein | |||||
CAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1936714‑1936871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccctttcgcTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTGC < NC_002947/1936916‑1936771 CAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGG > 4:146756/1‑149CAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGG > 7:320711/1‑149 AACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGC > 6:275961/1‑149 AACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGC < 3:32636/149‑1 AACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGC < 8:239477/149‑1 GCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCT > 6:165070/1‑149 CAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCT > 8:307807/1‑149 TGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAG < 7:307807/149‑1 AACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGG < 8:320711/149‑1 CTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCC < 5:337457/149‑1 GCCCTTTCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGT > 5:165070/1‑149 CCCTTTCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTT < 5:57299/149‑1 CTTTCGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCA < 8:218585/149‑1 CGCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTG < 7:11751/148‑1 GCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTGC > 7:167139/1‑148 GCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATC > 6:274652/1‑119 GCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATC < 5:274652/119‑1 GCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTG < 7:328328/108‑1 GCTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTG > 8:328328/1‑108 CAACGCGCACCAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCTTTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1936714‑1936871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccctttcgcTCCTGCACAGGCATTACACAATCCCTCGCAGGAGCGGGTTCACCCGCGAAAGGGCCCGCAAAGGCAACCTCAAATCCCCAGGAATTCGCAAAGCTCGCGCTTCTTGGCCAAGGCATCCTTGCGCCCCAACTCGATCAGTTCACTGC < NC_002947/1936916‑1936771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |