New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 193687161 (1.010)3 (0.050) 3/244 NT 5.6% intergenic (+24/+66) PP_1736/PP_1737 hypothetical protein/hypothetical protein
?NC_002947 = 1936916 46 (0.830)intergenic (+69/+21) PP_1736/PP_1737 hypothetical protein/hypothetical protein

CAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATACTCGAACGGCGAATTCAGCTGGCC  >  NC_002947/1936724‑1937017
                                                                                                                                                     |                                                                                                                                                  
cAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCt                                                                                                                                                   >  8:307807‑M1/1‑148 (MQ=255)
 aGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCgg                                                                                                                                                  <  5:275961/149‑1 (MQ=255)
      ggcggggGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGaa                                                                                                                                             >  8:96265/1‑149 (MQ=255)
             gtggtgAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTGGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTc                                                                                                                                      <  4:128717/149‑1 (MQ=255)
                  gAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGc                                                                                                                                  >  2:253391/1‑148 (MQ=255)
                  gAGCTATTTGCTGTTTGAGGCCAGCTATTGAAGTGAACTGATAGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGAGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTCTGCTGGCCC‑‑TTCCGCGGGTCAACACGCTACTGc                                                                                                                                  >  7:215128/1‑148 (MQ=255)
                    gCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAg                                                                                                                               >  8:40510/1‑149 (MQ=255)
                      tATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAgg                                                                                                                              >  5:212163/1‑148 (MQ=255)
                        tttGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAggg                                                                                                                             <  1:253391/147‑1 (MQ=255)
                            cTGTTTGATGCCATCTATTGCAGTGAACTGATCGAGTTTGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGATCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATtgt                                                                                                                        <  7:251697/148‑1 (MQ=255)
                            cTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATtgtg                                                                                                                       >  8:95464/1‑149 (MQ=255)
                            cTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATtgtg                                                                                                                       <  5:255829/149‑1 (MQ=255)
                            cTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATtgt                                                                                                                        <  7:96265/148‑1 (MQ=255)
                            cTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGGTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATtgtg                                                                                                                       <  1:323665/149‑1 (MQ=255)
                              gTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTgtgt                                                                                                                      >  5:268272/1‑148 (MQ=255)
                               tttGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTaa                                                                                                                    <  1:356183/149‑1 (MQ=255)
                                 tGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAAt                                                                                                                   <  3:146756/148‑1 (MQ=255)
                                    ggCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCA‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCt                                                                                                               >  6:170337/1‑149 (MQ=255)
                                     gCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCtg                                                                                                              >  7:120724/1‑149 (MQ=255)
                                             ttGCAGGGTACTGTTCGTGTTGGGGCGCAAGGTTTCCTTGGGCAAGAAGGGCGATCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGa                                                                                                       <  8:53079/148‑1 (MQ=255)
                                               gCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgc                                                                                                     >  7:167139‑M2/1‑146 (MQ=255)
                                                cAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgcg                                                                                                    <  7:11751‑M2/148‑4 (MQ=255)
                                                   tGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaag                                                                                                <  7:307807‑M1/149‑53 (MQ=255)
                                                   tGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgcgaaag                                                                                                <  8:218585‑M2/149‑8 (MQ=255)
                                                     aaCTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaaggg                                                                                              <  8:320711‑M1/149‑55 (MQ=255)
                                                     aaCTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgcgaaaggg                                                                                              <  5:57299‑M2/149‑10 (MQ=255)
                                                      aCTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgcgaaagggc                                                                                             >  5:165070‑M2/1‑139 (MQ=255)
                                                       cTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcc                                                                                            <  5:337457‑M1/149‑57 (MQ=255)
                                                        tGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCg                                                                                           >  4:370532/1‑149 (MQ=255)
                                                        tGATCGAGTTGGGGCGCAAGGATGCATTGGCAAAGAAGCGAGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGACTTTGCGTGACA‑‑TTTCTCGGGTGAACACGCTCCTGCGACGCAGTGTGTAATGCGTGGGAAGGAGCTAAAGGGCCg                                                                                           >  8:177819/1‑149 (MQ=255)
                                                             gAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCgcagc                                                                                       <  8:66748/148‑1 (MQ=255)
                                                             gAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCgcag                                                                                        >  2:123865/1‑147 (MQ=255)
                                                                   gggCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCtt                                                                                 >  8:93518/1‑148 (MQ=255)
                                                                   gggCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTa                                                                                >  6:78819/1‑149 (MQ=255)
                                                                    ggCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTAc                                                                               >  6:345079/1‑149 (MQ=255)
                                                                    ggCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTAc                                                                               <  1:141144/149‑1 (MQ=255)
                                                                     gcgcAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACt                                                                              >  8:131676/1‑149 (MQ=255)
                                                                      cgcAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTc                                                                             >  7:338841/1‑149 (MQ=255)
                                                                        cAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCgg                                                                           <  8:338841/149‑1 (MQ=255)
                                                                         aaGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCtgt                                                                                                             <  8:338425/114‑1 (MQ=255)
                                                                         aaGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCtgt                                                                                                             >  7:338425/1‑114 (MQ=255)
                                                                         aaGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCgcagc                                                                                       >  4:71277/1‑136 (MQ=255)
                                                                         aaGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCgcagc                                                                                       <  3:71277/136‑1 (MQ=255)
                                                                            gATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgc                                                                                                     >  6:274652‑M2/1‑117 (MQ=255)
                                                                            gATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgc                                                                                                     <  5:274652‑M2/119‑3 (MQ=255)
                                                                            gATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTAt                                                                       >  2:171117/1‑149 (MQ=255)
                                                                                 cTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGc                                                                   >  6:234838/1‑148 (MQ=255)
                                                                                 cTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCa                                                                  <  6:268272/149‑1 (MQ=255)
                                                                                  ttGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCCAGCTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTg                                                                    >  1:294220/1‑148 (MQ=255)
                                                                                      ccAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTg                                                             >  8:41333/1‑149 (MQ=255)
                                                                                       cAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgc                                                                                                     <  7:328328‑M2/108‑3 (MQ=255)
                                                                                       cAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgc                                                                                                     >  8:328328‑M2/1‑106 (MQ=255)
                                                                                               gcgAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTgg                                                    <  1:157370/149‑1 (MQ=255)
                                                                                                cgAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTggg                                                   >  3:138450/1‑149 (MQ=255)
                                                                                                cgAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTggg                                                   >  3:144113/1‑149 (MQ=255)
                                                                                                    ctgtgagAATGCCTGGGGATTTGAGGGTTCCTTTGCTGGCCC‑‑TTTCGTGGGTGAACCCGCTGCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTTCGCGCCTGGGtata                                               <  8:215128/143‑1 (MQ=255)
                                                                                                     tttGCGAATTCCTGGGGATTTTAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCg                                                                            <  7:28749/119‑1 (MQ=255)
                                                                                                     tttGCGAATTCCTGGGGATTTTAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCg                                                                            >  8:28749/1‑119 (MQ=255)
                                                                                                     tttGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGtata                                               >  7:84896/1‑148 (MQ=255)
                                                                                                         cGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATAcaca                                           >  1:36869/1‑148 (MQ=255)
                                                                                                           aaTTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATAc                                        <  7:93518/149‑1 (MQ=255)
                                                                                                                cTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCAc                                   <  7:41333/149‑1 (MQ=255)
                                                                                                                    ggATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCttt                               <  7:40510/149‑1 (MQ=255)
                                                                                                                       tttGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTc                             >  4:153114/1‑148 (MQ=255)
                                                                                                                       tttGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCa                            <  2:294220/149‑1 (MQ=255)
                                                                                                                          gAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATAc                         >  7:167547/1‑149 (MQ=255)
                                                                                                                           aGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATAc                         <  8:11751/148‑1 (MQ=255)
                                                                                                                           aGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATAc                         <  6:212163/148‑1 (MQ=255)
                                                                                                                                     tGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATACTCGAACGGc                <  1:123865/147‑1 (MQ=255)
                                                                                                                                       cGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATACTCGAACGGCGaa             <  6:57299/148‑1 (MQ=255)
                                                                                                                                         ggCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatccttgcgccccaactcgatcag          <  5:337457‑M2/149‑94 (MQ=255)
                                                                                                                                         ggCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATACTCGAACGGCGAATTc          <  5:78819/149‑1 (MQ=255)
                                                                                                                                          gCCC‑‑TTTCGCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatccttgcgccccaactcgatcagt         >  5:165070‑M1/1‑10 (MQ=255)
                                                                                                                                          gCCC‑‑TTTCGCTGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTTCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATACTCGAACGGCGAATTCa         <  7:177819/149‑1 (MQ=255)
                                                                                                                                           ccc‑‑TTTCGCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatccttgcgccccaactcgatcagtt        <  5:57299‑M1/149‑141 (MQ=255)
                                                                                                                                           ccc‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatccttgcgccccaactcgatcagtt        <  8:320711‑M2/149‑96 (MQ=255)
                                                                                                                                           ccc‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGTCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATACTCGAACGGCGAATTCAg        <  7:95464/149‑1 (MQ=255)
                                                                                                                                           acc‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCATGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTCCTCGGCTATCTGCAACTTGCGCGAGTGGGTATCCACATCAGGCCCCTTTTCATACTCGAGCGGCGAATTCAg        >  8:188880/2‑149 (MQ=255)
                                                                                                                                             c‑‑TTTCGCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatccttgcgccccaactcgatcagttca      <  8:218585‑M1/149‑143 (MQ=255)
                                                                                                                                             c‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatccttgcgccccaactcgatcagttca      <  7:307807‑M2/149‑98 (MQ=255)
                                                                                                                                             c‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATACTCGAACGGCGAATTCAGCt      <  8:120724/149‑1 (MQ=255)
                                                                                                                                                  tCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATACTCGAACGGCGAATTCAGCTgg    <  5:297750/148‑1 (MQ=255)
                                                                                                                                                   cGCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatccttgcgccccaactcgatcagttcactg   <  7:11751‑M1/148‑146 (MQ=255)
                                                                                                                                                    gCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatccttgcgccccaactcgatcagttcactgc  >  7:167139‑M1/1‑2 (MQ=255)
                                                                                                                                                    gCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatc                               >  6:274652‑M1/1‑2 (MQ=255)
                                                                                                                                                    gCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttggccaaggcatc                               <  5:274652‑M1/119‑118 (MQ=255)
                                                                                                                                                    gCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttg                                          >  8:328328‑M1/1‑2 (MQ=255)
                                                                                                                                                    gCtcctgcacaggcattacacaatccctcgcaggagcgggttcacccgcgaaagggcccgcaaaggcaacctcaaatccccaggaattcgcaaagctcgcgcttcttg                                          <  7:328328‑M1/108‑107 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
CAGCGGGGCGGGGGTGTTGAGCTATTTGCTGTTTGAGGCCAGCTATTGCAGTGAACTGATCGAGTTGGGGCGCAAGGATGCCTTGGCCAAGAAGCGCGAGCTTTGCGAATTCCTGGGGATTTGAGGTTGCCTTTGCGGGCCC‑‑TTTCGCGGGTGAACCCGCTCCTGCGAGGGATTGTGTAATGCCTGTGCAGGAGCGAAAGGGCCGCAGCAGGCTTACTCGGCTATCTGCAACTTGCGCGCCTGGGTATACACATACCGCACCTTTTCATACTCGAACGGCGAATTCAGCTGGCC  >  NC_002947/1936724‑1937017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.