| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2366297 | 64 (1.060) | 5 (0.090) | 5/250 | NT | 7.6% | coding (733/906 nt) | lysR | transcriptional regulator LysR |
| ? | NC_002947 | = 2366321 | 62 (1.100) | coding (757/906 nt) | lysR | transcriptional regulator LysR | |||||
ATTAACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2366144‑2366297‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacccgcCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCGCCACCCCCAGGCCTTGCCTGACCATGGCGCACACCGAAGCGGCACTGGTGGTTTCGATGACCGTGCGGCGGTTAACCCCGGCTGCACGAAAGTGCTGATCCAGACGC < NC_002947/2366321‑2366176 ATTAACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAA > 5:134142/1‑149ATTAACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAA > 7:6690/1‑149ATTAACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAA < 7:89263/149‑1 AACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCC > 3:248892/1‑149 AACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACC < 4:14442/148‑1 CCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCCTTGCGCCGCCTCCAGCCCGCT > 7:343808/1‑147 GTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGG < 8:343808/149‑1 GATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTG < 5:257504/147‑1 TCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGA > 1:139015/1‑108 TCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGA < 2:139015/108‑1 CCCGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCGCCACCCCCAGGCCTTGCCTGACCATGGCGCACACCGAAGCGGCACTGGTGGTTTCGATGACCGTGCGGCGGTTAACCCCGGCTGCACGAAAGTGCTGATCCAGAC > 7:300188/1‑149 CGCCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCGCCACCCCCAGGCCTTGCCTGACCATGGCGCACACCGAAGCGGCACTGGTGGTTTCGATGACCGTGCGGCGGTTAACCCCGGCTGCACGAAAGTGCTGATCCAcgctg < 8:169899/149‑6 ATTAACCTGGCCAGCCTGGATACCTACCGCCAGCGTCTGGATCAGCACTTTCGTGCAGCCGGGGTTAACCGCCGCACGGTCATCGAAACCACCAGTGCCGCTTCGGTGTGCGCCATGGTCAGGCAAGGCCTGGGGGTGGCGATCATCAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2366144‑2366297‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacccgcCTTGCGCCGCCTCCAGCCCGCTGAGCGGGTTGATGATCGCCACCCCCAGGCCTTGCCTGACCATGGCGCACACCGAAGCGGCACTGGTGGTTTCGATGACCGTGCGGCGGTTAACCCCGGCTGCACGAAAGTGCTGATCCAGACGC < NC_002947/2366321‑2366176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |