| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2425590 = | 38 (0.630) | 3 (0.050) | 3/256 | NT | 6.7% | coding (373/660 nt) | PP_2126 | LuxR family transcriptional regulator |
| ? | NC_002947 | 2425642 = | 47 (0.810) | coding (321/660 nt) | PP_2126 | LuxR family transcriptional regulator | |||||
CAGTACCTGCAAAGTGCTGATCCTGTCCATGCACACTGACCCGGACCTGATCATGCGGGCCCTGGAAAGCGGCGCCCACGGCTACCTGCTCAAGGACACCAGCGCCACCGAGCTGGAACAGGCGCTGGGTGCCGTACGCCACGGTGAGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2425741‑2425590‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGATCAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCACTTTGCAGGTACTGCCGCTGGCCCGCAGTTGGGTAAGGGCGTCCAGGCCGCTGGTCG > NC_002947/2425642‑2425784 CAGTACCTGCAAAGTGCTGATCCTGTCCATGCACACTGACCCGGACCTGATCATGCGGGCCCTGGAAAGCGGCGCCCACGGCTACCTGCTCAAGGACACCAGCGCCACCGAGCTGGAACAGGCGCTGGGTGCCGTACGCCACGGTGAGC < 2:362215/149‑1CAGTACCTGCAAAGTGCTGATCCTGTCCATGCACACTGACCCGGACCTGATCATGCGGGCCCTGGAAAGCGGCGCCCACGGCTACCTGCTCAAGGACACCAGCGCCACCGAGCTGGAACAGGCGCTGGGTGCCGTACGCCACGGTGAGC < 6:40801/149‑1 AGTACCTGCAAAGTGCTGATCCTGTCCATGCACACTGACCCGGACCTGATCATGCGGGCCCTGGAAAGCGGCGCCCACGGCTACCTGCTCAAGGACACCAGCGCCACCGAGCTGGAACAGGCGCTGGGTGCCGTACGCCACGGTGAGCG > 5:6563/1‑149 ACACCAGCGCCACCGAGCTGGAACAGGCGCTGGGTGCCGTACGCCACGGTGAGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCT < 5:327678/90‑1 ACACCAGCGCCACCGAGCTGGAACAGGCGCTGGGTGCCGTACGCCACGGTGAGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCT > 6:327678/1‑90 AGCTGGAACAGGCGCTGGGTGCCGTACGCCACGGTGAGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGATCAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCACTTTGCAGGTACTGCCGCTGG > 5:18596/1‑149 AGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGATCAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCACTTTGCAGGTACTGCCGCTGGCCCGCAGTTGGGTAAGGGCGTCCAGGCCGCTGGTCG < 6:18596/149‑1 GCTGGTGTCCTTGAGCAGGTAGCTGTGGGCGCCGCTTTCCAGGGCCCGCATGATCAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCAC > 3:300143/1‑90 GCTGGTGTCCTTGAGCAGGTAGCTGTGGGCGCCGCTTTCCAGGGCCCGCATGATCAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCAC < 4:300143/90‑1 CAGTACCTGCAAAGTGCTGATCCTGTCCATGCACACTGACCCGGACCTGATCATGCGGGCCCTGGAAAGCGGCGCCCACGGCTACCTGCTCAAGGACACCAGCGCCACCGAGCTGGAACAGGCGCTGGGTGCCGTACGCCACGGTGAGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2425741‑2425590‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGATCAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCACTTTGCAGGTACTGCCGCTGGCCCGCAGTTGGGTAAGGGCGTCCAGGCCGCTGGTCG > NC_002947/2425642‑2425784 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |