New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2425590 =	38 (0.630)	3 (0.050)	3/256	NT	6.7%	coding (373/660 nt)	PP_2126	LuxR family transcriptional regulator
	?	NC_002947	2425642 =	47 (0.810)					coding (321/660 nt)	PP_2126	LuxR family transcriptional regulator

GGTGGACTTGCCGCGCACGATCAGGCGCAGGATCTCAAGTTGCCGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGAT‑CAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCACTTTGCAG  >  NC_002947/2425447‑2425735                                                                                                                                                |                                                                                                                                                   ggTGGACTTGCCGCGCACGATCAGGCGCAGGATCTCAAGTTGCCGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAgcg                                                                                                                                                 <  1:277562/147‑1 (MQ=255) ggTGGACTTGCCGCGCACGATCAGGCGCAGGATCTCAAGTTGCCGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAgcg                                                                                                                                                 >  2:277562/1‑147 (MQ=255) cgaccagcggcctggacgcccttacccaactgcgggccagcggcagtacctgcaaagtgctgatcctgtccatgcacactgacccggacctgatcatgcgggccctggaaagcggcgcccacggctacctgctcaaggacaccAGCGCt                                                                                                                                               <  6:18596‑M1/6‑1 (MQ=255)        ttGCCGCGCACGATCAGGCGCAGGATCTCAAGTTGCCGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTg                                                                                                                                        >  1:251133/1‑149 (MQ=255)            cgcgCACGATCAGGCGCAGGATCTCAAGTTGCCGTGATGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCg                                                                                                                                     >  4:20431/1‑148 (MQ=255)                    aTCAGGCGCAGGATCTCAAGTTGCCGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCAcc                                                                                                                            <  1:2361/149‑1 (MQ=255)                        ggCGCAGGATCTCAAGTTGCCGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAgc                                                                                                                        >  2:357215/1‑149 (MQ=255)                              ggATCTCAAGTTGCCGTGACGTCAGATTACGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGt                                                                                                                  >  8:28218/1‑149 (MQ=255)                                  ctcAAGTTGCCGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTc                                                                                                                >  2:162015/1‑147 (MQ=255)                                     ccagcggcagtacctgcaaagtgctgatcctgtccatgcacactgacccggacctgatcatgcgggccctggaaagcggcgcccacggctacctgctcaaggacaccAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCt                                                                                                           >  5:18596‑M1/108‑149 (MQ=255)                                     aaGTTGCCGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTc                                                                                                                <  8:136819/144‑1 (MQ=255)                                           ccGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTg                                                                                                      <  5:601/148‑1 (MQ=255)                                              tGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGgcgc                                                                                                  <  5:316002/149‑1 (MQ=255)                                                 cGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTgg                                                                                               <  1:232017/149‑1 (MQ=255)                                                  gTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGgcg                                                                                                   <  8:64549/144‑1 (MQ=255)                                                  gTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGgcg                                                                                                   >  7:64549/1‑144 (MQ=255)                                                  gTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGgt                                                                                              <  4:347147/149‑1 (MQ=255)                                                         gtgctgatcctgtccatgcacactgacccggacctgatcatgcgggccctggaaagcggcgcccacagctacctgctcaaggacaccAgc                                                                                                                                                  <  4:300143‑M1/3‑1 (MQ=255)                                                         gtgctgatcctgtccatgcacactgacccggacctgatcatgcgggccctggaaagcggcgcccacagctacctgctcaaggacaccAgc                                                                                                                                                  >  3:300143‑M1/88‑90 (MQ=255)                                                          aTGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTg                                                                                       <  2:15066/148‑1 (MQ=255)                                                             ccGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGc                                                                                    <  7:202673/148‑1 (MQ=255)                                                             ccGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGc                                                                                    <  8:934/148‑1 (MQ=255)                                                             ccGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGc                                                                                    <  1:204337/148‑1 (MQ=255)                                                              cGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAg                                                                                  >  1:342262/1‑149 (MQ=255)                                                              cGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAg                                                                                  <  6:299199/149‑1 (MQ=255)                                                               gTTCGCCAGCGCTCGGCTGGCCTTGTTTGGGGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGAGGGCCGGGCTGAGGTAGCGCGCACCGTGGCGTACGGCATCCAGCGCCTGTTCCAGCGCGGTGGCGCTGGTGGCCTGGAGCAgg                                                                                 <  8:57165/149‑1 (MQ=255)                                                                     cAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCg                                                                           >  1:185544/1‑149 (MQ=255)                                                                           tCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGgcg                                                                     >  4:325478/1‑149 (MQ=255)                                                                             ggCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTGGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGgcgc                                                                    <  8:251204/148‑1 (MQ=255)                                                                                    cTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTc                                                             >  4:370476/1‑148 (MQ=255)                                                                                     ttGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTc                                                             >  4:107267/1‑147 (MQ=255)                                                                                       gTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAg                                                          <  2:94637/148‑1 (MQ=255)                                                                                        tttGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAggg                                                        <  3:20431/149‑1 (MQ=255)                                                                                            gtgtGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCg                                                    <  2:295957/149‑1 (MQ=255)                                                                                               tgCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCAt                                                 >  4:95376/1‑149 (MQ=255)                                                                                                 ccGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGa                                               >  1:205488/1‑149 (MQ=255)                                                                                                   gCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGAT‑c                                            <  4:341795/149‑1 (MQ=255)                                                                                                          cTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGAT‑CAGGTCCg                                     <  3:107267/149‑1 (MQ=255)                                                                                                               agcggcgcccacggctacctgctcaaggacaccAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGgtgt                                                                                            <  5:327678‑M1/57‑1 (MQ=255)                                                                                                               agcggcgcccacggctacctgctcaaggacaccAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGgtgt                                                                                            >  6:327678‑M1/34‑90 (MQ=255)                                                                                                                 atgaCGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGAT‑CAGGTCCGGGTCAgt                              >  2:260223/1‑149 (MQ=255)                                                                                                                       gtgtGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGAT‑CAGGTCCGGGTCAGTGTGCAt                        <  3:325478/149‑1 (MQ=255)                                                                                                                            cgCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTCTTCCAGCTCGGTGGCGCTGGTGTCATTGAGCAGGTAGCCTTAGGCGCCGCTTTCCAGGGCCAGCATGAT‑CAGGTCCGGGACAGTGTTCATGGa                     >  8:146188/2‑147 (MQ=255)                                                                                                                                   gCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGAT‑CAGGTCCGGGTCAGTGTGCATGGACAGGATCa             <  2:185544/148‑1 (MQ=255)                                                                                                                                      gggCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGAT‑CAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCAc         <  3:271668/149‑1 (MQ=255)                                                                                                                                       ggCTGAGGTAGCGCTCAGCGTGGCGTACGTCACGCAGCTACTGTTCCTGCTGGGGGGCGCTGGTGTCCTTGAGGAGGTAGCCGTGGGCGGGGCTTTCCAGGGCCCGCATGAT‑CTGGTGCGGGTCAGTGTGCATGGTCAGGATCATCACt        <  3:111975/149‑1 (MQ=255)                                                                                                                                           gAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCGGTGCCAGCGCGGTGGCGCTGGTGTCCTTGAGCAGTTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGAT‑CATGTCCGGGTCAGTGTGCATGGACAGGATCAGCACTTTGc    <  4:222561/149‑1 (MQ=255)                                                                                                                                              gTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGATCCAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCACTTTGCAg  <  1:260223/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   GGTGGACTTGCCGCGCACGATCAGGCGCAGGATCTCAAGTTGCCGTGACGTCAGATTATGCCGTTCGCCAGCGCTCGGCTTGCCTTGTTTGGTGTGCCGCAGCGCCTGGTTGATGACGGTGTGGGCGATGGCCGGGCTGAGGTAGCGCTCACCGTGGCGTACGGCACCCAGCGCCTGTTCCAGCTCGGTGGCGCTGGTGTCCTTGAGCAGGTAGCCGTGGGCGCCGCTTTCCAGGGCCCGCATGAT‑CAGGTCCGGGTCAGTGTGCATGGACAGGATCAGCACTTTGCAG  >  NC_002947/2425447‑2425735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.