New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2562502 =	54 (0.900)	3 (0.050)	3/248	NT	5.5%	coding (240/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase
	?	NC_002947	2562555 =	52 (0.930)					coding (293/1137 nt)	dauA	FAD‑dependent catabolic D‑arginine dehydrogenase

GCCACGCAGGCTGGGTATCAGTGCCAAGGCCGCGTCCCGGTCCAGCAGGGTGACTTCTGTGCCATTGGCCAGGTTCTGCGCGAAAGTTTGCTCAAGCAGTTCCCGCTGCTCCAGGCTGGCCACATACAGACAGCCTCGCGGCTCCAGCAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2562655‑2562502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcagcgggAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAGCCAGGTGCGATGGACCTTGA  >  NC_002947/2562555‑2562702                                                                                                                                                                                                                                                                                                                GCCACGCAGGCTGGGTATCAGTGCCAAGGCCGCGTCCCGGTCCAGCAGGGTGACTTCTGTGCCATTGGCTAGGTTCTGCGCGAAAGTTTGCTCAAGCAGTTCCCGCTGCTCCAGGCTGGCCACATACAGACAGCCTCGCGGCTCCAG                                                                                                                                                             >  2:252839/1‑147                                         TCCAGCAGGGTGACTTCTGTGCCATTGGCCAGGTTCTGCGCGAAAGTTTGCTCAAGCAGTTCCCGCTGCTCCAGGCTGGCCACATACAGACAGCCTCGCGGCTCCAGCAGCGG                                                                                                                                                       >  5:320525/1‑113                                         TCCAGCAGGGTGACTTCTGTGCCATTGGCCAGGTTCTGCGCGAAAGTTTGCTCAAGCAGTTCCCGCTGCTCCAGGCTGGCCACATACAGACAGCCTCGCGGCTCCAGCAGCGG                                                                                                                                                       <  6:320525/113‑1                                                                                                      CCCGCTGCTCCAGGCTGGCCACATACAGACAGCCTCGCGGCTCCAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGC                                                                             >  3:27052/1‑126                                                                                                      CCCGCTGCTCCAGGCTGGCCACATACAGACAGCCTCGCGGCTCCAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGC                                                                             <  4:27052/126‑1                                                                                                        CGCTGCTCCAGGCTGGCCACATACAGACAGCCTCGCGGCTCCAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGT                                                    >  1:165759/1‑149                                                                                                                                                    CAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAGCCAGGTGCGATGGA        <  8:249768/149‑1                                                                                                                                                      GCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAGTGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCAGTGCTACCCAGCCTGCGGGGCGAACCCCTGGCCGGCGCGGTGCGTGCGGCAGGTGCGATGGgcg      >  8:270873/1‑146                                                                                                                                                       CGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAGCCAGGTGCGATGGACCT     <  1:7809/149‑1                                                                                                                                                          GAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGGGCGGTGCTTGAGCCAGGTGCGATGGACCTTGA  <  5:131543/149‑1                                                                                                                                                                                                                                                                                                                GCCACGCAGGCTGGGTATCAGTGCCAAGGCCGCGTCCCGGTCCAGCAGGGTGACTTCTGTGCCATTGGCCAGGTTCTGCGCGAAAGTTTGCTCAAGCAGTTCCCGCTGCTCCAGGCTGGCCACATACAGACAGCCTCGCGGCTCCAGCAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2562655‑2562502 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcagcgggAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATACCCAGCCTGCGTGGCGAAACCCTGGCCGGCGCGGTGCTTGAGCCAGGTGCGATGGACCTTGA  >  NC_002947/2562555‑2562702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.