| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2562502 = | 54 (0.900) | 3 (0.050) | 3/248 | NT | 5.5% | coding (240/1137 nt) | dauA | FAD‑dependent catabolic D‑arginine dehydrogenase |
| ? | NC_002947 | 2562555 = | 52 (0.930) | coding (293/1137 nt) | dauA | FAD‑dependent catabolic D‑arginine dehydrogenase | |||||
TGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATAC > NC_002947/2562354‑2562641 | tgGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCAc > 1:157869/1‑149 (MQ=255)tcaaggtccatcgcacctggctcaagcaccgccccggccagggtttcgccacgcaggctgggtatcagtgccaaggccgcgtcccggtccagcagggtgacttctgtgccattggccaggttctgcgcgaaagtttgctcaagcagttc < 5:131543‑M1/1‑1 (MQ=255) aggtccatcgcacctggctcaagcaccgcgccggccagggtttcgccacgcaggctgggtatcagtgccaaggccgcgtcccggtccagcagggtgacttctgtgccattggccaggttctgcgcgaaagtttgctcaagcagttCCCg < 1:7809‑M1/4‑1 (MQ=255) cgcccatcgcacctgccgcacgcaccgcgccggccaggggttcgccccgcaggctgggtagcactgccaaggccgcgtcccggtccagcagggtgacttctgtgccactggccaggttctgcgcgaaagtttgctcaagcagttCCCgc > 8:270873‑M1/145‑149 (MQ=255) tccatcgcacctggctcaagcaccgcgccggccagggtttcgccacgcaggctgggtatcagtgccaaggccgcgtcccggtccagcagggtgacttctgtgccattggccaggttctgcgcgaaagtttgctcaagcagttCCCgctg < 8:249768‑M1/7‑1 (MQ=255) gAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGctgctg > 2:357460/1‑147 (MQ=255) aaTCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGa < 2:301428/148‑1 (MQ=255) tCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGcc > 7:185023/1‑149 (MQ=255) tCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGcc > 7:246529/1‑149 (MQ=255) gCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGctgt > 7:28710/1‑149 (MQ=255) gCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGct < 1:291814/147‑1 (MQ=255) tACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGctgtct > 5:301444/1‑149 (MQ=255) tACCATTCCACCGGGCGTTCGGCGGCCATGTTCATCGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGACGCGAGGctgtct > 1:349348/1‑149 (MQ=255) aTTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTAt < 5:205738/149‑1 (MQ=255) aCCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGc < 1:68368/149‑1 (MQ=255) ttCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTg > 2:241612/1‑148 (MQ=255) acgcaggctgggtatcagtgccaaggccgcgtcccggtccagcagggtgacttctgtgccattggccaggttctgcgcgaaagtttgctcaagcagttCCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCg > 1:165759‑M1/99‑149 (MQ=255) cATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGctgtctgt > 6:367495/1‑119 (MQ=255) cATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGctgtctgt < 5:367495/119‑1 (MQ=255) aTGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGctgtct > 7:335742/1‑116 (MQ=255) aTGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGctgtct < 8:335742/116‑1 (MQ=255) ggAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCtt > 1:333260/1‑148 (MQ=255) gCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGc > 2:53313/1‑148 (MQ=255) gCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGc > 7:249768/1‑148 (MQ=255) ttACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCaa > 7:300287/1‑148 (MQ=255) aCGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACt > 6:239752/1‑149 (MQ=255) gCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTc < 8:300287/149‑1 (MQ=255) gCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTc < 1:357460/149‑1 (MQ=255) cACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcg < 8:246529/149‑1 (MQ=255) gccgcgtcccggtccagcagggtgacttctgtgccattggccaggttctgcgcgaaagtttgctcaagcagttCCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCggg < 4:27052‑M1/53‑1 (MQ=255) gccgcgtcccggtccagcagggtgacttctgtgccattggccaggttctgcgcgaaagtttgctcaagcagttCCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCggg > 3:27052‑M1/74‑126 (MQ=255) cacaGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcgcg > 5:136472/1‑146 (MQ=255) cacaGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcgcg > 3:335134/1‑146 (MQ=255) cacaGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTcgcg > 1:346023/1‑146 (MQ=255) cAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGag < 1:375331/108‑1 (MQ=255) cAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGag > 2:375331/1‑108 (MQ=255) cAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTgg < 2:349348/148‑1 (MQ=255) cAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGc < 8:185023/149‑1 (MQ=255) aGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAAc > 7:43962/1‑130 (MQ=255) aGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAAc < 8:43962/130‑1 (MQ=255) cACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAAt < 2:333260/149‑1 (MQ=255) cTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATgg < 5:239752/149‑1 (MQ=255) aCCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca > 6:90205/1‑148 (MQ=255) aCCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca < 2:157869/148‑1 (MQ=255) aCCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca > 8:144218/1‑148 (MQ=255) aCCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca < 4:187429/148‑1 (MQ=255) ccGCGCCAGCCGGGCCTTCTACGAAGTGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca > 6:131543/1‑146 (MQ=255) ccGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGca > 1:62031/1‑146 (MQ=255) gcgcCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGaa < 8:28710/149‑1 (MQ=255) gcgcCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTAGCCAATGGCACAg > 1:252839/1‑147 (MQ=255) gcCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGagcag > 7:274368/1‑96 (MQ=255) gcCAGCCGGGACTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGagcag < 8:274368/96‑1 (MQ=255) ggCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCctgc < 6:301444/149‑1 (MQ=255) ttCTACGTAGGGCCAGCGCAGGGCTTCTGCGAGCACCCTCTGCTGGAGCAGCGAGGCTGTCTGTATGTGGCGAGGCTGGTGCAGCTGTAACTGCTTGAGCAATCTTTcgc < 5:261775/110‑1 (MQ=255) ccACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGc > 5:150909/1‑149 (MQ=255) cGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTg > 2:7809/1‑149 (MQ=255) cGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTg < 1:241612/149‑1 (MQ=255) cAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTgg > 4:277865/1‑148 (MQ=255) gggCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCAc > 3:200730/1‑149 (MQ=255) gggCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCAc < 2:62031/149‑1 (MQ=255) gggCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCAc > 8:6595/1‑149 (MQ=255) cTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATAc > 6:195391/1‑149 (MQ=255) | TGGTCGAGCGTGAATCGCAGCCTGGCTACCATTCCACCGGGCGTTCGGCGGCCATGTTCATGGAGGCTTACGGCACCCCACAGATCCAGGCACTGACCCGCGCCAGCCGGGCCTTCTACGAAGCGCCACCGCAGGGCTTCTGCGAGCACCCGCTGCTGGAGCCGCGAGGCTGTCTGTATGTGGCCAGCCTGGAGCAGCGGGAACTGCTTGAGCAAACTTTCGCGCAGAACCTGGCCAATGGCACAGAAGTCACCCTGCTGGACCGGGACGCGGCCTTGGCACTGATAC > NC_002947/2562354‑2562641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |