New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 272678849 (0.810)3 (0.050) 3/256 NT 7.0% coding (534/627 nt) PP_2388 LysE family transporter
?NC_002947 = 2726865 32 (0.550)coding (457/627 nt) PP_2388 LysE family transporter

GCGTGTCAGTCGTGGTCATGGTCTCTCCTTCGCTTAAGCCGGGTACTTTGCAGCAGATTCAGGCCGCCAGTTCCTTGAGGTTGTACAGCAGGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2726637‑2726788
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAGCGCAGCAACCGCATCATCAGCCTGGCGTCGGGCGTCGCCCTGCTGCTGATCGCCGCCGGCGGCCTGCTGTAC  <  NC_002947/2726865‑2726719
                                                                                                                                                                                                                                                                                                           
GCGTGTCAGTCGTGGTCATGGTCTCTCCTTCGCTTAAGCCGGGTACTTTGCAGCAGATTCAGGCCGCCAGTTCCTTGAGGTTGTACAGCAGGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTG                                                                                                                                                        <  2:232310/149‑1
                                                   AGCAGATTCAGGCCGCCAGTTCCTTGAGGTTGTACAGCAGGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATC                                                                                                     >  5:381448/1‑149
                                                                              GGTTGTACAGCAGGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAG                                                                          <  6:133715/149‑1
                                                                                          GGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAGCGCAGCAACCGC                                                              <  6:381448/149‑1
                                                                                                                                                   TGCTGTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAGCGCAGCAACCGCATCATCAGCCTGGCGTCGGGCGTCGCCCTGCTGCTGATCGCCGCCGGCGGCCTGCTG     >  3:19499/1‑149
                                                                                                                                                    GCTGTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAGCGCAGCAACCGCATCATCAGCCTGGCGTCGGGCGTCGCCCTGCTGCTGATCGCCGCCGGCGGCCTGCTG     >  5:303386/1‑148
                                                                                                                                                     CTGTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAGCGCAGCAACCGCATCATCAGCCTGGCGTCGGGCGTCGCCCTGCTGCTGATCGCCGCCGGCGGCCTGCTGTA   <  5:11561/149‑1
                                                                                                                                                      TGTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAGCGCAGCAACCGCATCATCAGCCTGGCGTCGGGCGTCGCCCTGCTGCTGATCGCCGCCGGCGGCCTGCTGTAC  <  7:87894/149‑1
                                                                                                                                                       GTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAGCGCAGCAACCGCATCATCAGCCTGGCGTCGGGCGTCGCCCTGCTG                             >  5:17461/1‑121
                                                                                                                                                       GTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAGCGCAGCAACCGCATCATCAGCCTGGCGTCGGGCGTCGCCCTGCTG                             <  6:17461/121‑1
                                                                                                                                                                                                                                                                                                           
GCGTGTCAGTCGTGGTCATGGTCTCTCCTTCGCTTAAGCCGGGTACTTTGCAGCAGATTCAGGCCGCCAGTTCCTTGAGGTTGTACAGCAGGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2726637‑2726788
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgTCGCTGCTGTGGGTGGCCATCGATTTCGCCGTGCTCAGCCTGTACATCTTCGCCATCGGCAAGATCGCCTCGCAGCGCAGCAACCGCATCATCAGCCTGGCGTCGGGCGTCGCCCTGCTGCTGATCGCCGCCGGCGGCCTGCTGTAC  <  NC_002947/2726865‑2726719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.