New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2726788	49 (0.810)	3 (0.050)	3/256	NT	7.0%	coding (534/627 nt)	PP_2388	LysE family transporter
	?	NC_002947	= 2726865	32 (0.550)					coding (457/627 nt)	PP_2388	LysE family transporter

GTACAGCAGGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCTTGCATCAGCCCGCCGCGCCCAGCCTTGGGGGCCTCGCT  >  NC_002947/2726719‑2727012                                                                                                                                                   |                                                                                                                                                    gTACAGCAGGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGAca                                                                                                                                                   <  7:87894‑M2/149‑3 (MQ=255)  tACAGCAGGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGAcag                                                                                                                                                  <  5:11561‑M2/149‑4 (MQ=255)    cagcagGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGAcagca                                                                                                                                                >  3:19499‑M2/1‑144 (MQ=255)    cagcagGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGAcagc                                                                                                                                                 >  5:303386‑M2/1‑144 (MQ=255)     agcagGCCGCCGGCGGAGATCAGCAGCAGGGCGACGCCCGACGCCACGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGcac                                                                                                                                               <  8:333091/149‑1 (MQ=255)          gccgccGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCAccacca                                                                                                                                          >  4:110386/1‑149 (MQ=255)              ccgGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGct                                                                                                                                      >  3:250721/1‑149 (MQ=255)              ccgGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGG‑CACCCACAGCAGCGACAGCACCACCATGctc                                                                                                                                     <  2:20855/149‑1 (MQ=255)               cggcggCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGctc                                                                                                                                     <  6:11561/149‑1 (MQ=255)                ggcggcGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCCCCCACAGCAGCGACCGCACCACCATGctct                                                                                                                                    >  4:191372/1‑149 (MQ=255)                   ggcgATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGc                                                                                                                                 <  3:338985/149‑1 (MQ=255)                       aTCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGaa                                                                                                                             <  2:300928/149‑1 (MQ=255)                        tCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGcacca                                                                                                                                             >  6:179037/1‑132 (MQ=255)                        tCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGcacca                                                                                                                                             <  5:179037/132‑1 (MQ=255)                           gcagcagGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCATGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGAt                                                                                                                         >  1:107863/1‑149 (MQ=255)                            cagcagGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGAc                                                                                                                                                    >  5:17461‑M2/1‑120 (MQ=255)                            cagcagGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGAc                                                                                                                                                    <  6:17461‑M2/121‑2 (MQ=255)                                              cgccAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACt                                                                                                      <  2:54803/149‑1 (MQ=255)                                                 cAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCg                                                                                                   >  1:309887/1‑149 (MQ=255)                                                         tgatgCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAACAGCGACAGCACCACAATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGaagaag                                                                                           >  5:152686/1‑149 (MQ=255)                                                             gCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGAcagcaaccgcatcatcagcctggcgtcgggcgtcgccctgctgctgatcgccgccggcggcc                                                                                       <  6:381448‑M2/149‑63 (MQ=255)                                                                         ctgcgAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGAcagcaaccgcatcatcagcctggcgtcgggcgtcgccctgctgctgatcgccgccggcggcctgctgtacaacc                                                                           <  6:133715‑M2/149‑75 (MQ=255)                                                                            cgAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAatgat                                                                          <  3:110386/147‑1 (MQ=255)                                                                            cgAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGt                                                                        <  4:250721/149‑1 (MQ=255)                                                                                        gCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGtt                                                              <  2:309887/147‑1 (MQ=255)                                                                                          cGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGATGAAAATGATGTCTTTCGGGTTGGa                                                           >  5:349965/1‑148 (MQ=255)                                                                                          cGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGa                                                           >  1:95319/1‑148 (MQ=255)                                                                                           gATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGaaa                                                         <  2:178938/149‑1 (MQ=255)                                                                                                cGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGcc                                                     >  5:159316/1‑148 (MQ=255)                                                                                                 gAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCcca                                                   <  2:107863/149‑1 (MQ=255)                                                                                                   aGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCccacc                                                 <  8:87894/149‑1 (MQ=255)                                                                                                    gATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGAcagcaaccgcatcatcagcctggcgtcgggcgtcgccctgctgctgatcgccgccggcggcctgctgtacaacctcaaggaactggcggcctgaatctgct                                                >  5:381448‑M2/1‑48 (MQ=255)                                                                                                      tGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATg                                              <  7:73544/149‑1 (MQ=255)                                                                                                        tACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGAAGCGACAGCACCACCATCCTCTTGCCGAACGATTCCGTGATCTCAATGAACTGAGGGAAGAAGCCGATGAAGAAAATGAAGTCTTTCGGGTAGTAAATGCCCACCATGaa                                            >  7:277075/1‑149 (MQ=255)                                                                                                             gCTGAGCACGGCGTAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCtt                                       <  1:161824/149‑1 (MQ=255)                                                                                                             gCTGAGCACGGCGAAATCGATGGCCCCCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATGCGGTGATCTGAATGAACTGCGGGAAGCAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCAGGCAGCCtt                                       >  7:141393/1‑149 (MQ=255)                                                                                                             gCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCtt                                       >  5:243142/1‑149 (MQ=255)                                                                                                             gCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCtt                                       <  2:95319/149‑1 (MQ=255)                                                                                                                  gCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCTTGCAt                                   >  7:92711/1‑148 (MQ=255)                                                                                                                                       cccacAGCAGCGACATCACCACCAAGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCTTGCATCAGCCCGCCGCGCCCAGCCTTg             <  6:349640/149‑1 (MQ=255)                                                                                                                                        ccacAACACCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCTTGCATCAGCCCGCCGCGCCCAGCCTTgg            <  6:152686/149‑1 (MQ=255)                                                                                                                                            agcagcGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCTTGCATCAGCCCGCCGCGCCCAGCCATGGGGGc        >  5:299838/1‑149 (MQ=255)                                                                                                                                              cagcGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGc                                                                                                    >  7:202707/1‑55 (MQ=255)                                                                                                                                              cagcGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGc                                                                                                    <  8:202707/55‑1 (MQ=255)                                                                                                                                                  gACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCTTGCATCAGCCCGCCGCGCCCAGCCTTGGGGGCctcgct  >  3:235454/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTACAGCAGGCCGCCGGCGGCGATCAGCAGCAGGGCGACGCCCGACGCCAGGCTGATGATGCGGTTGCTGCGCTGCGAGGCGATCTTGCCGATGGCGAAGATGTACAGGCTGAGCACGGCGAAATCGATGGCCACCCACAGCAGCGACAGCACCACCATGCTCTTGCCGAACGATTCGGTGATCTGAATGAACTGCGGGAAGAAGGCGATGAAGAAAATGATGTCTTTCGGGTTGGAAATGCCCACCATGAAGCCTTGCATCAGCCCGCCGCGCCCAGCCTTGGGGGCCTCGCT  >  NC_002947/2726719‑2727012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.