| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3547416 = | 59 (0.980) | 3 (0.050) | 3/254 | NT | 5.2% | coding (361/1377 nt) | PP_3132 | polysaccharide transporter |
| ? | NC_002947 | 3547489 = | 54 (0.940) | coding (434/1377 nt) | PP_3132 | polysaccharide transporter | |||||
AGGCAAGGTCGACCAATACCACGCGCTTTTGTTGGAAAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3547569‑3547416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGATCTGGGCGCTGGT > NC_002947/3547489‑3547636 AGGCAAGGTCGACCAATACCACGCGCTTTTGTTGGAAAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCC < 3:79770/149‑1 GGCAAGGTCGACCAATACCACGCGCTTTTGTTGGAAAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCG < 3:156438/149‑1 CAAGGTCGACCAATACCACGCGCTTTTGTTGGAAAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGC < 4:23982/149‑1 GTCGACCAATACCACGCGCTTTTGTTGGAAAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCA > 4:46284/1‑147 CAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTC > 5:219442/1‑148 GCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTG > 1:262060/1‑149 CAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTG < 2:262060/149‑1 ATCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGATCTGGGCGCTGGT < 2:138340/149‑1 AGGCAAGGTCGACCAATACCACGCGCTTTTGTTGGAAAGTGCGTACCGCCACATCTATCTTGGTGGACTGGAAACCCCAGATGGCCGCCGACAGGCCGGTGACCGCCAGTACCATCGGCAGTACCGGCGCGGCATAGGTCGAGTCGGCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3547569‑3547416‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaTCTGGGGTTTCCAGTCCACCAAGATAGATGTGGCGGTACGCACTTTCCAACAAAAGCGCGTGGTATTGGTCGACCTTGCCTCGCAGGTGGCGGGCCTGGTGGTGATGCTCGTGCTGGGCTTGCTGACCCATTCGATCTGGGCGCTGGT > NC_002947/3547489‑3547636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |