New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3676865	53 (0.880)	5 (0.090)	4/254	NT	8.7%	intergenic (‑20/‑133)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
	?	NC_002947	= 3676886	54 (0.940)					intergenic (‑41/‑112)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein

CGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3676713‑3676865 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgtACGCGACATTGAGGTCGCGCCACGGTTTAAA  <  NC_002947/3676886‑3676856                                                                                                                                                                                          CGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAA                                     >  6:16400/1‑149 CGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAA                                      <  7:302959/148‑1      ACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGT                                 <  4:180236/148‑1                                 GCTGCATAGACTAAATCATCGTAAGTCGCGGCCATTGCGTGCACAGATGCCAGGCCCAACACCATGGAAAAACCCACGCGTCTGATGACGAGACTATTCATGCTTCACTCCTTTAAACCGTACGCGACATTGAGGTCGCGCCACGGTT      <  5:349680/148‑1                                    GCATCGACTAAATCATCGGAAGGCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACCCCATGGAAAAACCAACGCGTCTGATGAATAGACTATTCATGCTTCACTCCTTTAAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAA  <  7:332481/149‑1                                     CATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACCCCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAA  <  7:337292/148‑1                                                                             CGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTACGCGACATTGAGGTCGCGCCACGG        >  7:227990/1‑102                                                                             CGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTACGCGACATTGAGGTCGCGCCACGG        <  8:227990/102‑1                                                                                                                                                                                          CGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3676713‑3676865 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccgtACGCGACATTGAGGTCGCGCCACGGTTTAAA  <  NC_002947/3676886‑3676856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.