New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3676865	53 (0.880)	5 (0.090)	4/254	NT	8.7%	intergenic (‑20/‑133)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
	?	NC_002947	= 3676886	54 (0.940)					intergenic (‑41/‑112)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein

ACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGA  >  NC_002947/3676718‑3677013                                                                                                                                                    |                                                                                                                                                      accacTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTg                                                                                                                                                      <  3:326096/149‑1 (MQ=255) accacTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTg                                                                                                                                                      >  7:309108/1‑149 (MQ=255) accacTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTg                                                                                                                                                      <  6:356474/149‑1 (MQ=255) accacTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGT                                                                                                                                                       <  4:180236‑M1/148‑1 (MQ=255)  ccacTTCGGCAATGCCGGCCTCGGTGGCTGCATCGAGGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTgg                                                                                                                                                     >  1:209456/1‑149 (MQ=255)  ccacTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTgg                                                                                                                                                     <  8:50830/149‑1 (MQ=255)   cacTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGgc                                                                                                                                                    >  8:244639/1‑149 (MQ=255)    acTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGgcg                                                                                                                                                   >  2:276895/1‑149 (MQ=255)      ttCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGgcgc                                                                                                                                                  >  2:101235/1‑148 (MQ=255)         ggCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGAcc                                                                                                                                              >  2:344413/1‑149 (MQ=255)          gCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCt                                                                                                                                             >  2:4003/1‑149 (MQ=255)            aaTGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGTCCTc                                                                                                                                            >  8:17472/1‑148 (MQ=255)            aaTGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTc                                                                                                                                            >  1:56974/1‑148 (MQ=255)                   gCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTcgc                                                                                                                                    <  1:276895/149‑1 (MQ=255)                    ccTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTcgcg                                                                                                                                   >  8:9409/1‑149 (MQ=255)                            gCTGCATAGACTAAATCATCGTAAGTCGCGGCCATTGCGTGCACAGATGCCAGGCCCAACACCATGGAAAAACCCACGCGTCTGATGACGAGACTATTCATGCTTCACTCCTTTAAACCGTacgcgacattgaggtcgcgccacggtt                                                                                                                            <  5:349680‑M1/148‑28 (MQ=255)                               gCATCGACTAAATCATCGGAAGGCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACCCCATGGAAAAACCAACGCGTCTGATGAATAGACTATTCATGCTTCACTCCTTTAAACCGTacgcgacattgaggtcgcgccacggtttaaa                                                                                                                        <  7:332481‑M1/149‑32 (MQ=255)                                cATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACCCCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTacgcgacattgaggtcgcgccacggtttaaa                                                                                                                        <  7:337292‑M1/148‑32 (MQ=255)                                        aaaTCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCg                                                                                                               <  2:209456/149‑1 (MQ=255)                                          atcatcGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCggg                                                                                                             <  2:359318/149‑1 (MQ=255)                                              tcGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGaa                                                                                                          >  1:157096/1‑148 (MQ=255)                                                ggAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAg                                                                                                       >  3:151027/1‑149 (MQ=255)                                                  aaGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGt                                                                                                     <  1:344413/149‑1 (MQ=255)                                                  aaGTCGCGGCCATTGCGTGCACCGATGCCAGGACCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGt                                                                                                     >  3:59307/1‑149 (MQ=255)                                                   aGTCTCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACTCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCTCGACCTCAATGTCGCGTACGGTTGAGTGTGAAGGCGGGGAAAAGGtt                                                                                                    <  2:335912/149‑1 (MQ=255)                                                   aGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGCCCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt                                                                                                    <  7:17472/149‑1 (MQ=255)                                                        cgGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAgg                                                                                                                        >  4:218960/1‑124 (MQ=255)                                                        cgGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAgg                                                                                                                        <  3:218960/124‑1 (MQ=255)                                                           ccATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGGGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATGttt                                                                                            <  2:56974/149‑1 (MQ=255)                                                            cATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCtttt                                                                                           <  5:16400/149‑1 (MQ=255)                                                             aTTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCttttt                                                                                          <  7:244639/149‑1 (MQ=255)                                                              ttGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCtttttt                                                                                         <  4:168817/149‑1 (MQ=255)                                                                  gTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTgccg                                                                                     >  5:369657/1‑149 (MQ=255)                                                                        cGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTacgcgacattgaggtcgcgccacgg                                                                                                                              >  7:227990‑M1/1‑77 (MQ=255)                                                                        cGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTacgcgacattgaggtcgcgccacgg                                                                                                                              <  8:227990‑M1/102‑26 (MQ=255)                                                                         gATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGCAAAAAAGATTAAACCTTTTCcccgccttcac                                                                              <  1:260394/149‑6 (MQ=38)                                                                              cAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGcc                                                                        >  4:248710/1‑149 (MQ=255)                                                                                   ccAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGc                                                                    >  6:354927/1‑148 (MQ=255)                                                                                       cacCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGc                                                               <  7:9409/149‑1 (MQ=255)                                                                                        acCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCt                                                              <  6:369657/149‑1 (MQ=255)                                                                                           aTGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGaa                                                           <  1:101235/149‑1 (MQ=255)                                                                                                aaaaCCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACtata                                                      <  6:12445/149‑1 (MQ=255)                                                                                                aaaaCCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACtata                                                      <  3:178509/149‑1 (MQ=255)                                                                                                aaaaCCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACtata                                                      <  4:151027/149‑1 (MQ=255)                                                                                                 aaaCCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGCTTCCGGCCGTGCGACGCTGAACtata                                                      <  1:4003/149‑1 (MQ=255)                                                                                                        cgcgTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGAc                                              <  2:157096/149‑1 (MQ=255)                                                                                                         gcgTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACg                                             >  3:346269/1‑149 (MQ=255)                                                                                                           gTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGc                                           >  8:172745/1‑149 (MQ=255)                                                                                                                     gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCg                                   >  1:162300/1‑147 (MQ=255)                                                                                                                        aCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAggg                              >  8:306418/1‑149 (MQ=255)                                                                                                                            ttCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAg                          <  7:172745/149‑1 (MQ=255)                                                                                                                             tCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGTGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAg                          <  8:309108/148‑1 (MQ=255)                                                                                                                                tGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGAt                      >  4:251198/1‑149 (MQ=255)                                                                                                                                 gCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGAtt                     >  1:246315/1‑149 (MQ=255)                                                                                                                                   ttCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTc                    >  4:157804/1‑148 (MQ=255)                                                                                                                                   ttCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTc                    >  1:178001/1‑148 (MQ=255)                                                                                                                                      aCTCGTTTAATCCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGATGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAAt                <  6:320086/149‑1 (MQ=255)                                                                                                                                      aCTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAAt                <  3:248710/149‑1 (MQ=255)                                                                                                                                      aCTCCTTTAAACCGTGGCGCGACCGCAATGTCGCGGACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTACTCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAAt                >  6:374416/1‑149 (MQ=255)                                                                                                                                        tCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAAtgt              >  8:351219/1‑149 (MQ=255)                                                                                                                                         ccTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGa                                                  >  8:231711/1‑112 (MQ=255)                                                                                                                                         ccTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGa                                                  <  7:231711/112‑1 (MQ=255)                                                                                                                                          cTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAAtgt              <  2:162300/147‑1 (MQ=255)                                                                                                                                          cTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTgc            >  8:177628/1‑149 (MQ=255)                                                                                                                                           tttAAACCGTGGCGCGACCTCAATGTCGCGTacggtttaaaggagtgaagcatgaatagtctcttcatcagacgcgttggtttttccatggggttgggcctggcatcggtgcacgcaatggccgcgacttccgatgatttcgtcgatg             <  7:337292‑M2/148‑118 (MQ=255)                                                                                                                                           tttAAACCGTGGCGCGACCTCAATGTCGCGTacggtttaaaggagtgaagcatgaatagtctattcatcagacgcgttggtttttccatggggttgggcctggcatcggtgcacgcaatggccgcgccttccgatgatttagtcgatgc            <  7:332481‑M2/149‑119 (MQ=255)                                                                                                                                           tttAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTgcg           >  8:230485/1‑149 (MQ=255)                                                                                                                                           tttAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTgcg           >  6:330484/1‑149 (MQ=255)                                                                                                                                             tAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTgcg           >  2:339579/1‑147 (MQ=255)                                                                                                                                               aaCCGTGGCGCGACCTCAATGTCGCGTacggtttaaaggagtgaagcatgaatagtctcgtcatcagacgcgtgggtttttccatggtgttgggcctggcatctgtgcacgcaatggccgcgacttacgatgatttagtctatgcagc         <  5:349680‑M2/148‑122 (MQ=255)                                                                                                                                                 ccGTGGCGCGACCTCAATGTCGCGTacggtttaaaggagtgaagcatgaatagtctcttcatcagacgcgttggtttttccatggtgttgggcctggcatcg                                                     <  8:227990‑M2/102‑78 (MQ=255)                                                                                                                                                 ccGTGGCGCGACCTCAATGTCGCGTacggtttaaaggagtgaagcatgaatagtctcttcatcagacgcgttggtttttccatggtgttgggcctggcatcg                                                     >  7:227990‑M2/1‑25 (MQ=255)                                                                                                                                                   gTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAg    >  2:260332/1‑148 (MQ=255)                                                                                                                                                    tGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGa  <  5:354927/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      ACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGG‑TTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGA  >  NC_002947/3676718‑3677013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.