New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3766030 =	51 (0.850)	3 (0.050)	3/254	NT	5.5%	coding (361/873 nt)	PP_5599	LysR family transcriptional regulator
	?	NC_002947	3766093 =	55 (0.960)					coding (424/873 nt)	PP_5599	LysR family transcriptional regulator

TTGGTCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTTGGGGACGCTGAAGGGCGGACATACCATGACTCCCGCATCGAGCTCTCCGCAGGCTACTTGTTCGTAAAGACTGCGCGAGTCCCCTGGCGTGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3766178‑3766030 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcgGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTC  >  NC_002947/3766093‑3766234                                                                                                                                                                                                                                                                                                     TTGGTCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTTGGGGACGCTGAAGGGCGGACATACCATGACTCCCGCATCGAGCTCTCCGCAGGCTACTTGTTCGTAAAGACTGCGCGAGTCCCCTGGCGTGATGCG                                                                                                                                                >  4:176754/1‑149         AAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTTGGGGACGCTGAAGGGCGGACATACCATGACACCCGCATCGAGCGCACCGCAGGCAACTTGTTCGTAAAGAGGGCGCGCGGCCCCTGGCGGGAGGCGGGggca                                                                                                                                          >  8:52193/1‑143                                                                                    TCCCGCATCGAGCTCTCCGCAGGCTACTTGTTCGTAAAGACTGCGCGAGTCCCCTGGCGTGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGAC                                                             >  4:334069/1‑149                                                                                     CCCGCATCGAGCTCTCCGCAGGCTACTTGTTCGTAAAGACTGCGCGAGTCCCCTGGCGTGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTT                                                                <  1:255890/145‑1                                                                                     CCCGCATCGAGCTCTCCGCAGGCTACTTGTTCGTAAAGACTGCGCGAGTCCCCTGGCGTGATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTT                                                                >  2:255890/1‑145                                                                                                                                                GATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTC  >  1:36332/1‑148                                                                                                                                                GATGCGGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATT   <  5:377956/147‑1                                                                                                                                                                                                                                                                                                     TTGGTCAAAAGCATCAGGGGTTCTTCTCGAAGAACCTGTATACGAATGCTTTTGGGGACGCTGAAGGGCGGACATACCATGACTCCCGCATCGAGCTCTCCGCAGGCTACTTGTTCGTAAAGACTGCGCGAGTCCCCTGGCGTGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3766178‑3766030 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcgGGAGTCATGGTATGTCCGCCCTTCAGCGTCCCCAAAAGCATTCGTATACAGGTTCTTCGAGAAGAACCCCTGATGCTTTTGACCAAAGACCCCGTTGACAAGCGCGACATCCGCTCGACGATTCTTGGTCGAAACCTGATTC  >  NC_002947/3766093‑3766234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.