| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3904389 = | 54 (0.900) | 4 (0.070) | 4/260 | NT | 6.5% | coding (354/1593 nt) | ilvA‑I | threonine deaminase |
| ? | NC_002947 | 3904431 = | 62 (1.050) | coding (312/1593 nt) | ilvA‑I | threonine deaminase | |||||
GACCTGCAGCCTACGTTTTCGTTCAAGATCCGGGGTGCCTACACCCGCCTGTCGCGACTGACCGATGTGCAGCGTGAGCGCGGGGTGATCACCGCTTCGGCGGGCAACCATGCCCAGGGCGTGGCCTTGGCCGCATCGCATCTGGGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3904538‑3904389‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgGTTGCCCGCCGAAGCGGTGATCACCCCGCGCTCACGCTGCACATCGGTCAGTCGCGACAGGCGGGTGTAGGCACCCCGGATCTTGAACGAAAACGTAGGCTGCAGGTCTTCGCGCTTGAGCAACACCTGGTTGCCCAGGGCGGCAG > NC_002947/3904431‑3904576 GACCTGCAGCCTACGTTTTCGTTCAAGATCCGGGGTGCCTACACCCGCCTGTCGCGACTGACCGATGTGCAGCGTGAGCGCGGGGTGATCACCGCTTCGGCGGGCAACCATGCCCAGGGCGTGGCCTTGGCCGCATCGCATCTGGGTAT < 4:138405/149‑1 GGGCAACCATGCCCAGGGCGTGGCCTTGGCCGCATCGCATCTGGGTATGGTTGCCCGCCGAAGCGGTGATCACCCCGCGCTCACGCTGCACATCGGTCAGTCGCGACAGGCGGGTGTAGGCACCCCGGATCTTGAACGAAAACGTAGGC > 5:301329/1‑149 ACCATGCCCAGGGCGTGGCCTTGGCCGCATCGCATCTGGGTATGGTTGCCCGCCGAAGCGGTGATCACCCCGCGCTCACGCTGCACATCGGTCAGTCGCGACAGGCGGGTGTAGGCACCCCGGATCTTGAACGAAAACGTAGGCTGCAG > 6:276948/1‑149 CCATGCCCAGGGCGTGGCCTTGGCCGCATCGCATCTGGGTATGGTTGCCCGCCGAAGCGGTGATCACCCCGCGCTCACGCTGCACATCGGTCAGTCGCGACAGGCGGGTGTAGGCACCCCGGATCTTGAA < 1:65337/130‑1 CCATGCCCAGGGCGTGGCCTTGGCCGCATCGCATCTGGGTATGGTTGCCCGCCGAAGCGGTGATCACCCCGCGCTCACGCTGCACATCGGTCAGTCGCGACAGGCGGGTGTAGGCACCCCGGATCTTGAA > 2:65337/1‑130 ATGGTTGCCCGCCGAAGCGGTGATCACCCCGCGCTCACGCTGCACATCGGTCAGTCGCGACAGGCGGGTGTAGGCACCCCGGATCTTGAACGAAAACGTAGGCTGCAGGTCTTCGCGCTTGAGCAACACCTGGTTGCCCAGGGCGGCAG > 6:5072/1‑149 GACCTGCAGCCTACGTTTTCGTTCAAGATCCGGGGTGCCTACACCCGCCTGTCGCGACTGACCGATGTGCAGCGTGAGCGCGGGGTGATCACCGCTTCGGCGGGCAACCATGCCCAGGGCGTGGCCTTGGCCGCATCGCATCTGGGTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3904538‑3904389‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgGTTGCCCGCCGAAGCGGTGATCACCCCGCGCTCACGCTGCACATCGGTCAGTCGCGACAGGCGGGTGTAGGCACCCCGGATCTTGAACGAAAACGTAGGCTGCAGGTCTTCGCGCTTGAGCAACACCTGGTTGCCCAGGGCGGCAG > NC_002947/3904431‑3904576 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |