| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4013887 = | 66 (1.100) | 5 (0.090) | 4/248 | NT | 8.2% | coding (229/519 nt) | PP_3541 | MgtC family transporter |
| ? | NC_002947 | 4013931 = | 50 (0.890) | coding (185/519 nt) | PP_3541 | MgtC family transporter | |||||
TTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4014042‑4013887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCG > NC_002947/4013931‑4014037 TTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGAT > 1:370862/1‑149TTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGAT > 3:42165/1‑149 CGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACACGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACA < 4:19573/149‑1 CGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACA < 7:185246/149‑1 TTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGG > 5:103978/1‑148 TGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGG < 7:1037/86‑1 TGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGG > 8:1037/1‑86 CCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGC > 2:17338/1‑147 CTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGC > 7:231791/1‑149 CTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAA > 1:48248/1‑128 CTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAA < 2:48248/128‑1 TGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCG > 3:1087/1‑149 ACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGC > 3:223746/1‑97 ACAGGGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGC < 4:223746/97‑1 TTGTGCGCTTGCTGATGGCTGCTGTGCTTGGCGCAGTACTGGGCTTCGAGCGCGAACACAAGGGCAAGTCTGCCGGGGTGCGTACCCACATGCTGGTGTCGCTGGGCGCTGCCCTGTTCATGCTGGCACCGAGCATGGCGGGGGCCGATGAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4014042‑4013887‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgaacaggGCAGCGCCCAGCGACACCAGCATGTGGGTACGCACCCCGGCAGACTTGCCCTTGTGTTCGCGCTCGAAGCCCAGTACTGCGCCAAGCACAGCAGCCATCAGCAAGCG > NC_002947/4013931‑4014037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |