| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4148251 | 48 (0.800) | 3 (0.050) | 3/256 | NT | 5.7% | coding (506/633 nt) | PP_3652 | LysE family transporter |
| ? | NC_002947 | = 4148281 | 54 (0.930) | coding (476/633 nt) | PP_3652 | LysE family transporter | |||||
CTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4148135‑4148251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgCCATCAGCGTTACGGTCAACGCGCTGATTACGATCATGGCCGGTTCCATCGCCGTGTTCCTGGCTGGCAGGCCGCTGTGGCAACAGGTTCAGCGTTGGTTGATGGGAACGGTGCTGGCGGGGCTGGCGGTGCGCATGCTGGCAG < NC_002947/4148281‑4148138 CTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATC > 5:240488/1‑116CTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATC < 6:240488/116‑1 CAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGCCATCAGCGTTACGGTCAACGCGCTGATTACGATCATGG < 1:349561/149‑1 CCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGCCATCAGCGTTACGGTCAACGCGCTGATT < 1:155424/97‑1 CCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGCCATCAGCGTTACGGTCAACGCGCTGATT > 2:155424/1‑97 ATCGCCATCAGCGTTACGGTCAACGCGCTGATTACGATCATGGCCGGTTCCATCGCCGTGTTCCTGGCTGGCAGGCCGCTGTGGCAACAGGTTCAGCGTTGGTTGATGGGAACGGTGCTGGCGGGGCTGGCGGTGCGCATGCTGGCAG > 5:54286/1‑148 CTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4148135‑4148251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgCCATCAGCGTTACGGTCAACGCGCTGATTACGATCATGGCCGGTTCCATCGCCGTGTTCCTGGCTGGCAGGCCGCTGTGGCAACAGGTTCAGCGTTGGTTGATGGGAACGGTGCTGGCGGGGCTGGCGGTGCGCATGCTGGCAG < NC_002947/4148281‑4148138 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |