New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4148251	48 (0.800)	3 (0.050)	3/256	NT	5.7%	coding (506/633 nt)	PP_3652	LysE family transporter
	?	NC_002947	= 4148281	54 (0.930)					coding (476/633 nt)	PP_3652	LysE family transporter

GCAATAGGCGATCAACGGCGCCCTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACATGACGGCAATCTTGGGGTTGAGCAGGCTGG  >  NC_002947/4148113‑4148398                                                                                                                                           |                                                                                                                                                    gCAATAGGCGATCAACGGCGCCCTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAgcgc                                                                                                                                           <  4:10837/149‑1 (MQ=255)        gCGATCAACGGCGCCCTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGAcc                                                                                                                                    <  6:97102/149‑1 (MQ=255)          gATCAACGGCGCCCTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGCCCg                                                                                                                                   >  6:360910/1‑148 (MQ=255)          gATCAACGGCGCCCTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCg                                                                                                                                   >  5:121607/1‑148 (MQ=255)          gATCAACGGCGCCCTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGt                                                                                                                                  <  6:121607/149‑1 (MQ=255)               aCGGCGCCCTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGc                                                                                                                             >  2:247149/1‑149 (MQ=255)                          cTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGcgat                                                                                                                   >  5:54286‑M2/1‑144 (MQ=255)                            gCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTg                                                                                                                >  8:221679/1‑149 (MQ=255)                             ccAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGc                                                                                                               >  6:134985/1‑149 (MQ=255)                              cAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGccatcagcgttacggtcaacgcgctgattacgatcatgg                                                                                                              <  1:349561‑M1/149‑40 (MQ=255)                               aGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAAGCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGt                                                                                                             <  5:323683/149‑1 (MQ=255)                               aGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCgg                                                                                                             <  3:275762/149‑2 (MQ=255)                                gCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTc                                                                                                            <  1:246989/149‑1 (MQ=255)                                   tGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGaa                                                                                                         <  5:134985/149‑1 (MQ=255)                                     cgcACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAAcc                                                                                                       >  3:169581/1‑149 (MQ=255)                                     cgcACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAAcc                                                                                                       >  8:214330/1‑149 (MQ=255)                                      gcACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAAccc                                                                                                      <  1:146747/149‑1 (MQ=255)                                      gcACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAAcc                                                                                                       >  5:80193/1‑148 (MQ=255)                                       cACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAAcc                                                                                                       >  5:227436/1‑147 (MQ=255)                                               gCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGc                                                                                             <  3:81876/149‑1 (MQ=255)                                                ccccGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGc                                                                                             >  7:294285/1‑148 (MQ=255)                                                              ttCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACg                                                                              <  8:294285/149‑1 (MQ=255)                                                                        ccaacGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGccatcagcgttacggtcaacgcgctgatt                                                                                                                        <  1:155424‑M1/97‑30 (MQ=255)                                                                        ccaacGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGccatcagcgttacggtcaacgcgctgatt                                                                                                                        >  2:155424‑M1/1‑68 (MQ=255)                                                                         caacGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGcc                                                                   >  4:85148/1‑149 (MQ=255)                                                                         caacGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGATGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGTCTGCAACAGCACGCTGCCGTGGcc                                                                   >  5:264908/1‑149 (MQ=255)                                                                              cTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGtt                                                              <  7:221679/149‑1 (MQ=255)                                                                              cTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGtt                                                              >  2:218320/1‑149 (MQ=255)                                                                                    cTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGAGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATg                                                         >  5:42411/1‑148 (MQ=255)                                                                                           cacaGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAg                                                                                                    <  4:279331/98‑1 (MQ=255)                                                                                           cacaGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAg                                                                                                    >  3:279331/1‑98 (MQ=255)                                                                                            acaGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGc                                                <  6:80193/149‑1 (MQ=255)                                                                                              aGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCAt                                              >  6:4872/1‑149 (MQ=255)                                                                                              aGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGGGGCCCGGTTCGATGAATTGCGGCAt                                              >  8:238628/1‑149 (MQ=255)                                                                                                 ggCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAg                                           <  4:169581/149‑1 (MQ=255)                                                                                                  gCCTGCCAGCCAGGAACACGGCGATTGAACCGGCCATGATCGTAATCAGCGCGTTTACCGTATCGCTGATGTCGATCTGGGTAGAACGCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGc                                          <  5:360910/149‑1 (MQ=255)                                                                                                  gCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGc                                          <  7:214330/149‑1 (MQ=255)                                                                                                     tGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGa                                        >  3:49507/1‑148 (MQ=255)                                                                                                       ccagccagGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAg                                     <  4:49507/149‑1 (MQ=255)                                                                                                        cagccagGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAgg                                    >  1:2339/1‑149 (MQ=255)                                                                                                        cagccagGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAgg                                    >  5:103981/1‑149 (MQ=255)                                                                                                           caagGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTAc                                 <  6:227436/147‑1 (MQ=255)                                                                                                             agGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACAt                               >  1:306617/1‑149 (MQ=255)                                                                                                               gAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCaa                                                                                     <  2:326950/93‑1 (MQ=255)                                                                                                               gAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCaa                                                                                     >  1:326950/1‑93 (MQ=255)                                                                                                                   acGGCGATGGAACCGTCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCg                                                  <  3:141780/124‑1 (MQ=255)                                                                                                                     ggCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACATGACGGCaa                       >  5:49006/1‑149 (MQ=255)                                                                                                                          tGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACATGACGGCAATCTTg                  <  5:4872/149‑1 (MQ=255)                                                                                                                             aaCCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACATGACGGCAATCTTgggg               <  1:218320/149‑1 (MQ=255)                                                                                                                             aaCCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACATGACGGCAATCTTgggg               >  2:197253/1‑149 (MQ=255)                                                                                                                                  gCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACATGACGGCAATCTTGGGGTTGAg          <  2:2339/149‑1 (MQ=255)                                                                                                                                   ccATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGcgatcatggccggttccatcgccgtgttcctggctggcaggccgctgtggcaacaggttcagcgttggttgatgggaacggtgctggcggggctggcggtgcgcatgctg         <  1:349561‑M2/149‑111 (MQ=255)                                                                                                                                   ccATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACATGACGGCAATCTTGGGGTTGAGc         <  2:306617/149‑1 (MQ=255)                                                                                                                                        aTCGccatcagcgttacggtcaacgcgctgattacgatcatggccggttccatcgccgtgttcctggctggcaggccgctgtggcaacaggttcagcgttggttgatgggaacggtgctggcggggctggcggtgcgcatgctggcag     >  5:54286‑M1/1‑4 (MQ=255)                                                                                                                                          cGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACATGACGGCAATCTTGGGGTTGAGCAGGCtgg  >  1:281528/1‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                    GCAATAGGCGATCAACGGCGCCCTTCTGCCAGCATGCGCACCGCCAGCCCCGCCAGCACCGTTCCCATCAACCAACGCTGAACCTGTTGCCACAGCGGCCTGCCAGCCAGGAACACGGCGATGGAACCGGCCATGATCGTAATCAGCGCGTTGACCGTAACGCTGATGGCGATCTGCGTCGAACCCAGCACCAGCGACTGCAACAGCACGCTGCCGTGGCCCGGTTCGATGAATTGCGGCATGAGCGACAGGTACATGACGGCAATCTTGGGGTTGAGCAGGCTGG  >  NC_002947/4148113‑4148398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.