New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4604411 = | 61 (1.010) | 3 (0.050) | 3/250 | NT | 5.3% | coding (241/411 nt) | PP_4076 | hypothetical protein |
? | NC_002947 | 4604450 = | 49 (0.870) | coding (280/411 nt) | PP_4076 | hypothetical protein |
GCGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4604563‑4604411 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAG > NC_002947/4604450‑4604596 GCGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCA < 4:305963/148‑1 CGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAA < 2:185418/149‑1 CGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCA > 3:82105/1‑147 GTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGC < 1:349712/149‑1 GTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGC > 8:230631/1‑149 CGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACG > 6:63338/1‑148 CGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTG > 3:79333/1‑135 CGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTG < 4:79333/135‑1 CAAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTAGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCAC < 6:365732/149‑1 AAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACT < 3:287627/149‑1 AAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACT > 6:183708/1‑149 AAAGCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGCCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACT < 6:151642/149‑1 GCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAA < 3:194025/149‑1 GCGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAA < 3:305963/149‑1 CGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAG < 6:361611/149‑1 CGGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAG < 8:39115/149‑1 GCGGTTGTGTCCGTTTACCAGCAGCTCAAGCTGCAACTGCTCTGCCTGGTTGTTGACCTGCACCTGGCAGTCGAGCCTGAAATGCAGTTCCAACGGGGCGTGACAATCCGGTACCGCTTTGAGCGCGCGCACGTGGATGCGCGGTTCAAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4604563‑4604411 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaagcgGTACCGGATTGTCACGCCCCGTTGGAACTGCATTTCAGGCTCGACTGCCAGGTGCAGGTCAACAACCAGGCAGAGCAGTTGCAGCTTGAGCTGCTGGTAAACGGACACAACCGCTACACCCGAGTGAGGTGACCCATGTCACTGAAG > NC_002947/4604450‑4604596 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |