| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4612747 = | 69 (1.150) | 5 (0.090) | 5/252 | NT | 7.8% | intergenic (+1709/‑398) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein |
| ? | NC_002947 | 4612807 = | 53 (0.930) | intergenic (+1769/‑338) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein | |||||
GTCTTGCCGCACTTGAGGCGTAGCGTGTTGCCCGCTTCGACTTCGTAGTCGCCTGCGATGAGGTCGTTTTTGCCACCCCCCACTTTCAAGGTGTCGTTGGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTGGCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4612901‑4612747‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaacGACACCTTGAAAGTGGGGGGTGGCAAAAACGACCTCATCGCAGGCGACTACGAAGTCGAAGCGGGCAACACGCTACGCCTCAAGTGCGGCAAGACCCTTATCGAAATGCATGCCAATGGCACGCTGAACATCACCTGCGAGACCTTCA > NC_002947/4612807‑4612954 GTCTTGCCGCACTTGAGGCGTAGCGTGTTGCCCGCTTCGACTTCGTAGTCGCCTGCGATGAGGTCGTTTTTGCCACCCCCCACTTTCAAGGTGTCGTTGGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTG > 3:287093/1‑149GTCTTGCCGCACTTGAGGCGTAGCGTGTTGCCCGCTTCGACTTCGTAGTCGCCTGCGATGAGGTCGTTTTTGCCACCCCCCACTTTCAAGGTGTCGTTGGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTG > 4:108582/1‑149 TCTTGCCGCACTTGAGGCGTAGCGTGTTGCCCGCTTCGACTTCGTAGTCGCCTGCGATGAGGTCGTTTTTGCCACCCCCCACTTTCAAGGTGTCGTTGGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTGG < 4:287093/149‑1 GCCGCACTTGAGGCGTAGCGTGTTGCCCGCTTCGACTTCGTAGTCGCCTGCGATGAGGTCGTTTTTGCCACCCCCCACTTTCAAGGTGTCGTTGGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTGGCCAA > 5:378244/1‑149 TAGTCGCCTGCGATGAGGTCGTTTTTGCCACCCCCCACTTTCAAGGTGTCGTTGGCCTTGAGGACGCGCAGACGATTGCCTGCCAATGGCGACCGATTCGTCCTGG < 1:193599/106‑1 TAGTCGCCTGCGATGAGGTCGTTTTTGCCACCCCCCACTTTCAAGGTGTCGTTGGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCATGG > 2:193599/1‑105 GTGTCGTTGGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTGGCCAACGACACCTTGAAAGTGGGGGGTGGCAAAAACGACCTCATCGCAGGCGACTACGAAGTCGAAGCGGGCAACACGCTACGCCTCAAG > 8:166896/1‑149 TTGGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGCCCGATTCGTCCTGGCCAACGACACCTTGAAAGTGGGGGGTGGCATAAACGACCTCATCGCAGGCGACTACGAAGTCGAAGCGGGCTAACCGCTACGCCTCAAGTGCGG > 1:141663/1‑148 GGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTGGCCAACGACACCTTGAAAGTGGGGGGTGGCAAAAACGACCTCATCGCAGGCGACTACGAAGTCGAAGCGGGCAACACGCTACGCCTCAAGTGCGGC > 7:217127/1‑147 GACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTGGCCAACGACACCTTGAAAGTGGGGGGTGGCAAAAACGACCTCATCGCAGGCGACTACGAAGTCGAAGCGGGCAACACGCTACGCCTCAAGTGCGGCAAGACCC < 7:166896/148‑1 CAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTGGCCAACGACACCTTGAAAGTGGGGGGTGGCAAAAACGACCTCATCGCAGGCGACTACGAAGTCGAAGCGGGCAACACGCTACGCCTCAAGTGCGGCAAGACCCTTATCGAAAT < 8:217127/149‑1 GGCCAACGACACCTTGAAAGTGGGGGGTGGCAAAAACGACCTCATCGCAGGCGACTACGAAGTCGAAGCGGGCAACACGCTACGCCTCAAGTGCGGCAAGACCCTTATCGAAATGCATGCCAATGGCACGCTGAACATCACCTGCGAGA < 5:349296/149‑1 CCAACGACACCTTGAAAGTGGGGGGTGGCAAAAACGACCTCATCGCAGGCGACTACGAAGTCGAAGCGGGCAACACGCTACGCCTCAAGTGCGGCAAGACCCTTATCGAAATGCATGCCAATGGCACGCTGAACATCACCTGCGAGACC < 5:238838/149‑1 CGACACCTTGAAAGTGGGGGGTGGCAAAAACGACCTCATCGCACGCGACTACGAAGTCGAAGCGGGCAACACGCTACGCCTCAAGTGCGGCAAGACCCTTATCGAAATGCATGCCAATGGCACGCTGAACATCACCTGCGAGACCTTCA < 8:330309/149‑1 GTCTTGCCGCACTTGAGGCGTAGCGTGTTGCCCGCTTCGACTTCGTAGTCGCCTGCGATGAGGTCGTTTTTGCCACCCCCCACTTTCAAGGTGTCGTTGGCCTTGACGACGCGCAGACGATTG‑CGGCCAATGGCGACCGATTCGTCCTGGCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4612901‑4612747‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaacGACACCTTGAAAGTGGGGGGTGGCAAAAACGACCTCATCGCAGGCGACTACGAAGTCGAAGCGGGCAACACGCTACGCCTCAAGTGCGGCAAGACCCTTATCGAAATGCATGCCAATGGCACGCTGAACATCACCTGCGAGACCTTCA > NC_002947/4612807‑4612954 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |