| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4896378 = | 39 (0.650) | 9 (0.180) | 7/224 | NT | 21.2% | intergenic (+11/‑197) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4896467 = | 34 (0.670) | intergenic (+100/‑108) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
GGGCAGATTGCCAGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4896546‑4896378‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGCTGCTCGCCGCAGGC > NC_002947/4896467‑4896613 GGGCAGATTGCCAGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGAT < 2:4570/149‑1GGGCAGATTGCCAGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTGTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGAT < 5:7430/149‑1 GCAGATTGCCAGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTT < 3:212936/149‑1 AGATTGCCAGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCGGTAGGAGCGGATTTta > 1:135233/1‑147 TTGCCAGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCG < 6:42155/149‑1 CAGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCG > 3:296158/1‑147 AGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCGCCTACGGGGGGCCGCGCCCGGTCCGCGCCTGGAGGAGCGGATTTACCCGAGAAG > 8:216428/1‑149 AGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCGCCTACGGGGGACCGCGCCCGGTCCGCGCCTGGAGGCGCGGATTTACCCGCGAAG > 8:210868/1‑149 TATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCG > 8:341228/1‑149 TATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCG > 5:127196/1‑149 TATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCAACGGGGGACCGCGCACGGTCCGCGCCTGAAGGAGCGGATTTACCCGCGAAGAGGCCG > 3:130092/1‑149 CGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAGACCCACCCGTTA > 5:300253/1‑147 ACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCC > 3:200255/1‑149 CCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCC > 3:290098/1‑148 CCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCGCAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCC > 5:373065/1‑148 CCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAAC > 7:6895/1‑117 CCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAAC < 8:6895/117‑1 ACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTT > 6:385391/1‑149 GGACCGCGCACGGTCCGCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGA < 4:290098/149‑1 CGCGCACGGTCCGCGCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAA < 5:385391/149‑1 CCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCAGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGC > 4:115931/1‑149 AAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGCTGCTC > 5:78369/1‑149 AAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGCTGCTC < 7:252183/149‑1 CGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGCTGCTCGCCGCAG < 1:375882/149‑1 GCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGCTGCTCGCCGCAGGC < 5:42204/149‑1 GGGCAGATTGCCAGCGACTATAACGGGTGGGTTTATACGGGTTAAAGAACAAAAAATGCTTTGGTTATGCTTCTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGGGGACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4896546‑4896378‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttacccgcgaagaggccggcACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCGTTATAGTCGCTGGCAATCTGCCCCAACACCCTTCAAGAACAAGGACGCAACGTGAAAAAACTCTTCACCGCCTCGCTGCTCGCCGCAGGC > NC_002947/4896467‑4896613 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |