| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4896378 = | 39 (0.650) | 9 (0.180) | 7/224 | NT | 21.2% | intergenic (+11/‑197) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4896467 = | 34 (0.670) | intergenic (+100/‑108) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
TCTTTACCGCCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑CATAACCAAAGCATTTTTTGTTCTTTAACCCGTA > NC_002947/4896231‑4896511 | gcctgcggcgagcagcgaggcggtgaagagttttttcacgttgcgtccttgttcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGc < 5:42204‑M1/2‑1 (MQ=255) tttACCGCCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCg > 5:69904/1‑149 (MQ=255) ctgcggcgagcagcgaggcggtgaagagttttttcacgttgcgtccttgttcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCg < 1:375882‑M1/4‑1 (MQ=255) tACCGCCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCg < 4:310915/147‑1 (MQ=255) gagcagcgaggcggtgaagagttttttcacgttgcgtccttgttcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCtt < 7:252183‑M1/11‑1 (MQ=255) gagcagcgaggcggtgaagagttttttcacgttgcgtccttgttcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCtt > 5:78369‑M1/139‑149 (MQ=255) aGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTcgc < 8:321152/149‑1 (MQ=255) gcgaggcggtgaagagttttttcacgttgcgtccttgttcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatactggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCgg > 4:115931‑M1/134‑149 (MQ=255) cAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTaaa > 8:113116/1‑149 (MQ=255) aaTGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAAt < 3:168594/149‑1 (MQ=255) gCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATCGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCg > 5:191998/1‑149 (MQ=255) ccATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGc < 4:129974/149‑1 (MQ=255) cATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCt > 2:277120/1‑149 (MQ=255) caTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTTAATCCGGTGCTACAGGCGCGG‑ACCGTgcgc > 6:210749/1‑149 (MQ=255) ttgttcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGG‑ACCGTGcgcg < 5:385391‑M1/50‑1 (MQ=255) aTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGcgcg < 3:136236/149‑1 (MQ=255) tGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCACATAGCGGGTAAATCAGCTACTCAAGGCGCGG‑GCCCTGCGCgg > 6:229441/1‑149 (MQ=255) aTTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTATTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTc > 1:224843/1‑149 (MQ=255) tcttgaagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTcc < 4:290098‑M1/54‑1 (MQ=255) aagggtgttggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGt > 6:385391‑M1/91‑149 (MQ=255) gCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAg > 6:300240/1‑145 (MQ=255) gCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAg < 5:300240/145‑1 (MQ=255) gCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGGAGGAGc > 2:269043/1‑149 (MQ=255) cacaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 6:250285/149‑1 (MQ=255) ggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg > 3:290098‑M1/82‑148 (MQ=255) ggggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg > 5:373065‑M1/82‑148 (MQ=255) acaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCggg < 7:113116/149‑1 (MQ=255) gggcagattgccagcgactataacgggtgggtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgcGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGt > 3:200255‑M1/81‑149 (MQ=255) aagaagACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCGATTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGGGCGCGGGCC‑‑‑CCCGTTGGGGCcgggt > 7:336250/1‑147 (MQ=255) gaagtCCCACGAGCAGGGGGCGGCTTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCGCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTTCAg < 6:283708/111‑1 (MQ=39) gaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAAAGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAg > 5:283708/1‑111 (MQ=255) gaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GG‑ACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTAccc < 1:352021/149‑1 (MQ=17) ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCcgc > 3:262878/1‑148 (MQ=255) aCGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTTAATACGCGCCTACAGGCGCGG‑ACCGGGCGCGGTGC‑‑‑CCCGGAGGAGCGGGGTTAACCGCGa > 1:204250/1‑148 (MQ=255) gtgCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGATTGGGTTGTTTCCCATAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAaga < 6:191998/147‑1 (MQ=255) cAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGGG‑‑‑GG‑ACCGCGCACGGTCCGCGCCTGTAGGAGCGGATTTACCCGCGAAGAGGc < 1:277120/149‑1 (MQ=14) cAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATCGGTTGTTTCCCAAACCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGc < 5:210749/149‑1 (MQ=255) taacgggtgggtctatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCg > 5:300253‑M1/61‑147 (MQ=255) cggcgTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCCTAGGAGCGGGTTTACCCGCGAAGAGGCCGGcaca > 6:127196/1‑149 (MQ=255) gtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg > 7:6895‑M1/51‑117 (MQ=255) gtttatacgggttaaagaacaaaaaatgctttggttatgcttctgcctgtGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCgg < 8:6895‑M1/67‑1 (MQ=255) tgctcGCTGTGGGAATGGGGTGTTGCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑c < 6:69904/146‑1 (MQ=255) tcGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑CATaa > 6:82234/1‑149 (MQ=255) tcGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTAGCCGGTAAATACGCACCTACAGGCCCGG‑ACCCTGCGCGGTCC‑‑‑CCCGGAGGAGCCGGGTTACCCGCCAAGAGGCCGGCACACGCACAAC‑Caaa > 4:130092/1‑146 (MQ=255) cTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑CATAAcc > 7:341228/1‑148 (MQ=255) aaTGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑CATAACCAAAGCAtt < 5:82234/149‑1 (MQ=255) gggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑CATAACCAAAGCAttttt > 7:210868/1‑149 (MQ=255) gggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑CATAACCAAAGCAttttt > 7:216428/1‑149 (MQ=255) gggTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTAGCGGGTAAATACCCTACAACAGGCCCGG‑ACCCTGCGCGGTGC‑‑‑CCCGTAGGAGCGGGTTTACCCCCGAAGAGGCCGCCACAGGCCGAAC‑CATaaccaaaccaaattt > 4:296158/1‑144 (MQ=25) gtttttCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACACGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑CATAACCAAAGCATTTTTTGt < 8:336250/146‑1 (MQ=255) ccAAAGCGTGATAGCGCCTGCGCCGGCCTCTTAGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGCAG‑CATAACCAAAGCATTTTTTGTTCTTTaa > 8:242349/1‑149 (MQ=255) cAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑CATAACCAAAGCATTTTTTGTTCTTTAAc > 8:252183/1‑149 (MQ=255) cAAAGCGTGATAGCGCCTGCGCCGGCCGCTTAGCCGGGTAATACGCGCCGACAGGCGCGGCCCCGGGGGGGGGCC‑‑‑CCCGAGGGGCCGGGTTTACCC‑CGGAGAGGGCGGGCCCGGCCGAAGCCAAAACCAAGACATTTTTTTTGTTTTaa > 2:135233/1‑149 (MQ=255) cGTGATCGCGCGTGCGCGGGCCTCTTGGGGGGAAATTCCGCTCCTACCGGCGGGT‑ACCGGGCGCGGCCC‑‑‑CCCGTAGTTGGGGGTTTACCGGCTAAGAGGCCGGCACAGGCAGAAG‑CATAACCAAAGCATTTTTTGTTCTTTAACCCGta < 2:204250/149‑1 (MQ=255) gTGATAGCGCCTGCGCCGGCCAATTAGCGGGTAAATCCGCTACAAAAGGCCCGG‑CCCCGGCCCCCTAC‑‑‑CCCCGAGGAGCCGGTTTAACCGCGAAGAGGCCGGCACCAGCACCAG‑CAAAACCCAAACATTTTTTGTTCTTTAAACCgaa > 4:219008/1‑146 (MQ=255) | TCTTTACCGCCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGG‑ACCGTGCGCGGTCC‑‑‑CCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAG‑CATAACCAAAGCATTTTTTGTTCTTTAACCCGTA > NC_002947/4896231‑4896511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |